EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 13798773 lines in total Total number of methylation call strings processed: 27597546 Final Cytosine Methylation Report ================================= Total number of C's analysed: 314149561 Total methylated C's in CpG context: 10722930 Total methylated C's in CHG context: 1570404 Total methylated C's in CHH context: 3455732 Total C to T conversions in CpG context: 32227593 Total C to T conversions in CHG context: 64160249 Total C to T conversions in CHH context: 202012653 C methylated in CpG context: 25.0% C methylated in CHG context: 2.4% C methylated in CHH context: 1.7%