CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 256358 458713 35.85 715071 2 233424 490970 32.22 724394 3 207975 424321 32.89 632296 4 205700 315328 39.48 521028 5 197250 262113 42.94 459363 6 194822 225430 46.36 420252 7 214630 218155 49.59 432785 8 101835 249881 28.95 351716 9 90887 227559 28.54 318446 10 91997 216996 29.77 308993 11 95978 223226 30.07 319204 12 93061 228492 28.94 321553 13 91013 234335 27.97 325348 14 85672 231889 26.98 317561 15 82453 234284 26.03 316737 16 75672 228927 24.84 304599 17 71646 222982 24.32 294628 18 73263 226044 24.48 299307 19 72788 230507 24.00 303295 20 73112 231018 24.04 304130 21 73970 234698 23.96 308668 22 71434 230993 23.62 302427 23 71810 229521 23.83 301331 24 70123 228918 23.45 299041 25 68304 226918 23.14 295222 26 68613 223458 23.49 292071 27 69029 230648 23.03 299677 28 70906 226931 23.81 297837 29 68862 235009 22.66 303871 30 67688 229057 22.81 296745 31 69037 225986 23.40 295023 32 67074 221487 23.24 288561 33 68046 223285 23.36 291331 34 68792 222869 23.59 291661 35 67009 221823 23.20 288832 36 66988 224546 22.98 291534 37 65430 220529 22.88 285959 38 65566 221502 22.84 287068 39 67197 223394 23.12 290591 40 67439 220546 23.42 287985 41 67642 221980 23.36 289622 42 68079 225636 23.18 293715 43 67140 224243 23.04 291383 44 67255 222188 23.24 289443 45 67791 222214 23.38 290005 46 68660 223340 23.51 292000 47 67833 220233 23.55 288066 48 67742 221478 23.42 289220 49 69001 219736 23.90 288737 50 66590 225568 22.79 292158 51 67328 223031 23.19 290359 52 67628 231680 22.59 299308 53 65713 220848 22.93 286561 54 65341 219838 22.91 285179 55 64423 213933 23.14 278356 56 64358 212451 23.25 276809 57 65136 215173 23.24 280309 58 66010 215237 23.47 281247 59 66944 214341 23.80 281285 60 65085 217231 23.05 282316 61 65928 212815 23.65 278743 62 64766 217463 22.95 282229 63 64163 214048 23.06 278211 64 63766 213768 22.98 277534 65 64635 209792 23.55 274427 66 64869 210023 23.60 274892 67 63859 205421 23.71 269280 68 62599 206049 23.30 268648 69 62016 203629 23.35 265645 70 62017 203994 23.31 266011 71 60890 201419 23.21 262309 72 60530 200974 23.15 261504 73 60287 197731 23.37 258018 74 58995 195974 23.14 254969 75 57969 195198 22.90 253167 76 57638 194044 22.90 251682 77 58233 192185 23.25 250418 78 58243 193229 23.16 251472 79 57302 190191 23.15 247493 80 56083 189400 22.85 245483 81 55417 187403 22.82 242820 82 54213 186418 22.53 240631 83 54708 187108 22.62 241816 84 54836 187305 22.65 242141 85 54364 184024 22.80 238388 86 52974 181402 22.60 234376 87 51888 181024 22.28 232912 88 51812 180041 22.35 231853 89 51133 177213 22.39 228346 90 51107 177977 22.31 229084 91 51249 174506 22.70 225755 92 49702 173399 22.28 223101 93 49651 172880 22.31 222531 94 49305 171268 22.35 220573 95 48662 169833 22.27 218495 96 49071 172586 22.14 221657 97 47174 165050 22.23 212224 98 43868 155250 22.03 199118 99 34579 121849 22.11 156428 100 45095 155395 22.49 200490 101 41439 152934 21.32 194373 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 400156 451724 46.97 851880 2 236179 408089 36.66 644268 3 92816 397644 18.92 490460 4 40690 411702 8.99 452392 5 23849 383650 5.85 407499 6 20166 377769 5.07 397935 7 14953 469447 3.09 484400 8 6113 506485 1.19 512598 9 4942 466349 1.05 471291 10 5089 446037 1.13 451126 11 5175 447935 1.14 453110 12 5199 451182 1.14 456381 13 4638 430289 1.07 434927 14 4211 430008 0.97 434219 15 4166 439974 0.94 444140 16 3650 439766 0.82 443416 17 3798 433762 0.87 437560 18 3833 434421 0.87 438254 19 3299 433552 0.76 436851 20 3437 454785 0.75 458222 21 3463 463313 0.74 466776 22 3464 458454 0.75 461918 23 3621 461999 0.78 465620 24 3367 465877 0.72 469244 25 3355 450538 0.74 453893 26 3753 456042 0.82 459795 27 3387 461865 0.73 465252 28 3297 459566 0.71 462863 29 3693 464341 0.79 468034 30 3425 468036 0.73 471461 31 3343 461184 0.72 464527 32 3380 461281 0.73 464661 33 3383 462791 0.73 466174 34 3252 454952 0.71 458204 35 3522 459937 0.76 463459 36 3338 461205 0.72 464543 37 3260 449922 0.72 453182 38 3489 456295 0.76 459784 39 3421 452851 0.75 456272 40 3351 452596 0.73 455947 41 3472 452975 0.76 456447 42 3265 456633 0.71 459898 43 3368 449735 0.74 453103 44 3289 457845 0.71 461134 45 3402 455638 0.74 459040 46 3248 449851 0.72 453099 47 3409 452644 0.75 456053 48 3388 460158 0.73 463546 49 3302 451435 0.73 454737 50 3617 451640 0.79 455257 51 3410 455385 0.74 458795 52 3511 454499 0.77 458010 53 3582 452848 0.78 456430 54 3541 459138 0.77 462679 55 3615 452695 0.79 456310 56 3761 456280 0.82 460041 57 3827 454542 0.83 458369 58 4416 450832 0.97 455248 59 4008 453701 0.88 457709 60 4122 457758 0.89 461880 61 4183 454240 0.91 458423 62 4350 453873 0.95 458223 63 4264 449866 0.94 454130 64 4344 448565 0.96 452909 65 4704 444780 1.05 449484 66 4486 437931 1.01 442417 67 4262 429423 0.98 433685 68 4582 433389 1.05 437971 69 4333 432836 0.99 437169 70 4229 425431 0.98 429660 71 4390 423814 1.03 428204 72 4352 424253 1.02 428605 73 4298 416483 1.02 420781 74 4281 413533 1.02 417814 75 4308 415003 1.03 419311 76 4246 406526 1.03 410772 77 4306 407475 1.05 411781 78 4074 401465 1.00 405539 79 4097 395209 1.03 399306 80 4108 393527 1.03 397635 81 4195 390722 1.06 394917 82 4122 384522 1.06 388644 83 4159 390619 1.05 394778 84 4309 389721 1.09 394030 85 4092 381815 1.06 385907 86 4216 385465 1.08 389681 87 4248 383188 1.10 387436 88 4240 375941 1.12 380181 89 4303 374567 1.14 378870 90 4231 374199 1.12 378430 91 4373 366063 1.18 370436 92 4460 367979 1.20 372439 93 4584 364939 1.24 369523 94 4360 358762 1.20 363122 95 4502 357448 1.24 361950 96 4561 354772 1.27 359333 97 4504 323692 1.37 328196 98 4024 297045 1.34 301069 99 2600 191367 1.34 193967 100 2961 194654 1.50 197615 101 5898 319227 1.81 325125 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 355242 507585 41.17 862827 2 164903 538315 23.45 703218 3 74046 678846 9.83 752892 4 58064 737756 7.30 795820 5 51688 884265 5.52 935953 6 41240 975093 4.06 1016333 7 36026 1233570 2.84 1269596 8 22689 1328679 1.68 1351368 9 17882 1215689 1.45 1233571 10 17808 1189677 1.47 1207485 11 20298 1189663 1.68 1209961 12 18406 1215853 1.49 1234259 13 19656 1242624 1.56 1262280 14 20509 1278918 1.58 1299427 15 18415 1316855 1.38 1335270 16 18141 1349901 1.33 1368042 17 19910 1358903 1.44 1378813 18 17752 1412413 1.24 1430165 19 18079 1446234 1.23 1464313 20 20162 1491811 1.33 1511973 21 18124 1496710 1.20 1514834 22 19113 1503702 1.26 1522815 23 20434 1501386 1.34 1521820 24 18154 1505063 1.19 1523217 25 19194 1519839 1.25 1539033 26 20102 1535188 1.29 1555290 27 18473 1539637 1.19 1558110 28 18255 1539749 1.17 1558004 29 20165 1533713 1.30 1553878 30 17858 1519620 1.16 1537478 31 17996 1500063 1.19 1518059 32 19461 1510008 1.27 1529469 33 17817 1505845 1.17 1523662 34 19480 1518967 1.27 1538447 35 19965 1507351 1.31 1527316 36 18290 1518203 1.19 1536493 37 17818 1509862 1.17 1527680 38 20330 1519044 1.32 1539374 39 18260 1513808 1.19 1532068 40 18664 1515188 1.22 1533852 41 20389 1519750 1.32 1540139 42 18527 1533097 1.19 1551624 43 19373 1516188 1.26 1535561 44 19852 1527062 1.28 1546914 45 18594 1512765 1.21 1531359 46 18440 1519023 1.20 1537463 47 19479 1512274 1.27 1531753 48 17578 1517384 1.15 1534962 49 18119 1498275 1.19 1516394 50 19092 1494515 1.26 1513607 51 17668 1479321 1.18 1496989 52 18359 1478821 1.23 1497180 53 19266 1471338 1.29 1490604 54 17679 1476021 1.18 1493700 55 18358 1477754 1.23 1496112 56 19519 1471214 1.31 1490733 57 17671 1489038 1.17 1506709 58 19817 1472161 1.33 1491978 59 19775 1487718 1.31 1507493 60 18085 1468228 1.22 1486313 61 18735 1458494 1.27 1477229 62 19417 1446305 1.32 1465722 63 17786 1431058 1.23 1448844 64 18600 1422681 1.29 1441281 65 19123 1422317 1.33 1441440 66 17742 1412988 1.24 1430730 67 17922 1406786 1.26 1424708 68 18809 1397857 1.33 1416666 69 17410 1387387 1.24 1404797 70 17457 1382961 1.25 1400418 71 18861 1375449 1.35 1394310 72 17243 1373429 1.24 1390672 73 18329 1355480 1.33 1373809 74 18663 1352712 1.36 1371375 75 17204 1344621 1.26 1361825 76 17137 1335503 1.27 1352640 77 18700 1324859 1.39 1343559 78 16375 1316537 1.23 1332912 79 16886 1306556 1.28 1323442 80 17998 1299148 1.37 1317146 81 16697 1284132 1.28 1300829 82 17464 1272759 1.35 1290223 83 17807 1273122 1.38 1290929 84 16663 1257715 1.31 1274378 85 16330 1244311 1.30 1260641 86 16878 1233235 1.35 1250113 87 15892 1229752 1.28 1245644 88 15687 1222450 1.27 1238137 89 16960 1212287 1.38 1229247 90 15685 1204137 1.29 1219822 91 15944 1189605 1.32 1205549 92 16364 1189004 1.36 1205368 93 15541 1176576 1.30 1192117 94 15595 1166982 1.32 1182577 95 16694 1152700 1.43 1169394 96 15229 1130052 1.33 1145281 97 15306 1101932 1.37 1117238 98 15182 1024109 1.46 1039291 99 10075 709177 1.40 719252 100 10352 633638 1.61 643990 101 15061 1029817 1.44 1044878 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 148900 211448 41.32 360348 2 134507 196211 40.67 330718 3 145315 218520 39.94 363835 4 138794 246198 36.05 384992 5 58834 303363 16.24 362197 6 33983 163828 17.18 197811 7 31011 177463 14.88 208474 8 33241 167879 16.53 201120 9 29730 149547 16.58 179277 10 33329 163576 16.93 196905 11 35503 159409 18.21 194912 12 34320 154653 18.16 188973 13 34880 150859 18.78 185739 14 36670 152338 19.40 189008 15 35566 140646 20.18 176212 16 34217 137169 19.96 171386 17 41151 149302 21.61 190453 18 39638 141492 21.88 181130 19 37915 136588 21.73 174503 20 35963 134807 21.06 170770 21 37495 133307 21.95 170802 22 36485 135774 21.18 172259 23 34960 130583 21.12 165543 24 33553 125252 21.13 158805 25 36851 130980 21.96 167831 26 33624 125792 21.09 159416 27 36851 126961 22.50 163812 28 34659 122402 22.07 157061 29 35210 127356 21.66 162566 30 33932 117243 22.45 151175 31 32263 120119 21.17 152382 32 31457 113028 21.77 144485 33 33866 114338 22.85 148204 34 33269 117338 22.09 150607 35 39232 122229 24.30 161461 36 33819 112688 23.08 146507 37 34410 116940 22.74 151350 38 31466 111573 22.00 143039 39 32505 109493 22.89 141998 40 33725 110397 23.40 144122 41 31290 106587 22.69 137877 42 31592 109017 22.47 140609 43 31734 108215 22.68 139949 44 29584 103855 22.17 133439 45 34402 108545 24.07 142947 46 29242 99227 22.76 128469 47 29505 99639 22.85 129144 48 29148 98062 22.91 127210 49 28201 100430 21.92 128631 50 27332 93838 22.56 121170 51 27113 92448 22.68 119561 52 27915 95517 22.62 123432 53 28183 91759 23.50 119942 54 26771 91727 22.59 118498 55 26684 90520 22.77 117204 56 25174 88958 22.06 114132 57 25531 86350 22.82 111881 58 25403 86303 22.74 111706 59 24790 83180 22.96 107970 60 24779 82983 22.99 107762 61 22435 80724 21.75 103159 62 22341 80239 21.78 102580 63 23877 77806 23.48 101683 64 23188 78590 22.78 101778 65 22219 74580 22.95 96799 66 23246 77118 23.16 100364 67 21817 76173 22.26 97990 68 22839 76569 22.98 99408 69 21314 73712 22.43 95026 70 20934 73744 22.11 94678 71 21608 69268 23.78 90876 72 20759 68704 23.20 89463 73 20358 70063 22.51 90421 74 19002 67263 22.03 86265 75 19318 66899 22.41 86217 76 19260 65849 22.63 85109 77 18854 65361 22.39 84215 78 18949 65561 22.42 84510 79 18189 63972 22.14 82161 80 17765 62674 22.09 80439 81 17662 62255 22.10 79917 82 17847 61453 22.51 79300 83 17871 59466 23.11 77337 84 18406 62204 22.83 80610 85 17147 60116 22.19 77263 86 16702 59046 22.05 75748 87 16882 57650 22.65 74532 88 16332 57359 22.16 73691 89 17104 56984 23.09 74088 90 17185 56034 23.47 73219 91 16315 55539 22.71 71854 92 15683 54137 22.46 69820 93 15855 55008 22.37 70863 94 16085 54348 22.84 70433 95 15705 53144 22.81 68849 96 15413 52809 22.59 68222 97 16085 53304 23.18 69389 98 14476 49740 22.54 64216 99 12844 0 100.00 12844 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52207 290089 15.25 342296 2 55664 297332 15.77 352996 3 52597 303733 14.76 356330 4 56916 314408 15.33 371324 5 4172 567486 0.73 571658 6 2991 676361 0.44 679352 7 2025 370557 0.54 372582 8 1954 396576 0.49 398530 9 1774 340816 0.52 342590 10 1772 326734 0.54 328506 11 2450 405648 0.60 408098 12 1959 339803 0.57 341762 13 1929 339873 0.56 341802 14 1931 333828 0.58 335759 15 1949 315772 0.61 317721 16 1844 297691 0.62 299535 17 2092 317934 0.65 320026 18 2146 283088 0.75 285234 19 1897 283592 0.66 285489 20 2034 280354 0.72 282388 21 2320 269100 0.85 271420 22 2081 288632 0.72 290713 23 2062 285751 0.72 287813 24 1912 261273 0.73 263185 25 1976 267121 0.73 269097 26 2013 275481 0.73 277494 27 1922 258987 0.74 260909 28 1806 247465 0.72 249271 29 1977 262330 0.75 264307 30 2221 255830 0.86 258051 31 1952 247963 0.78 249915 32 1873 251476 0.74 253349 33 2115 273971 0.77 276086 34 2043 244252 0.83 246295 35 2189 248644 0.87 250833 36 2012 243498 0.82 245510 37 1848 230831 0.79 232679 38 2059 238334 0.86 240393 39 1910 229205 0.83 231115 40 1963 222915 0.87 224878 41 2070 219798 0.93 221868 42 2086 206790 1.00 208876 43 2266 212910 1.05 215176 44 1909 215617 0.88 217526 45 1878 199509 0.93 201387 46 2003 200380 0.99 202383 47 2123 205635 1.02 207758 48 2019 196311 1.02 198330 49 1947 200427 0.96 202374 50 2137 196229 1.08 198366 51 2039 184053 1.10 186092 52 2356 183848 1.27 186204 53 2664 203159 1.29 205823 54 1995 185042 1.07 187037 55 1960 185737 1.04 187697 56 1867 184848 1.00 186715 57 1950 175182 1.10 177132 58 1676 173095 0.96 174771 59 1458 177870 0.81 179328 60 1262 169766 0.74 171028 61 1173 170525 0.68 171698 62 1136 171274 0.66 172410 63 1209 173562 0.69 174771 64 1121 160588 0.69 161709 65 1206 166981 0.72 168187 66 1089 153794 0.70 154883 67 1150 164166 0.70 165316 68 1050 160330 0.65 161380 69 1047 158480 0.66 159527 70 1019 156000 0.65 157019 71 1043 158178 0.66 159221 72 1006 148303 0.67 149309 73 940 147889 0.63 148829 74 957 152717 0.62 153674 75 1042 145059 0.71 146101 76 844 140274 0.60 141118 77 1006 146502 0.68 147508 78 965 139641 0.69 140606 79 914 139752 0.65 140666 80 915 136516 0.67 137431 81 907 131657 0.68 132564 82 895 129490 0.69 130385 83 940 131657 0.71 132597 84 890 125704 0.70 126594 85 865 133798 0.64 134663 86 807 126096 0.64 126903 87 868 124789 0.69 125657 88 861 119724 0.71 120585 89 911 127154 0.71 128065 90 910 122410 0.74 123320 91 842 122693 0.68 123535 92 812 119780 0.67 120592 93 852 116151 0.73 117003 94 788 114350 0.68 115138 95 842 117058 0.71 117900 96 840 111804 0.75 112644 97 795 110692 0.71 111487 98 632 105595 0.59 106227 99 478 0 100.00 478 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 80441 420274 16.07 500715 2 66547 352068 15.90 418615 3 68036 358885 15.94 426921 4 67489 348531 16.22 416020 5 9828 648676 1.49 658504 6 10038 904443 1.10 914481 7 10882 1192767 0.90 1203649 8 10272 1184860 0.86 1195132 9 11320 1115527 1.00 1126847 10 10765 1142383 0.93 1153148 11 10981 1117697 0.97 1128678 12 10458 1043566 0.99 1054024 13 10191 1075381 0.94 1085572 14 10413 1082339 0.95 1092752 15 10205 1085583 0.93 1095788 16 9366 1033883 0.90 1043249 17 10628 1034225 1.02 1044853 18 9980 1029024 0.96 1039004 19 9186 972040 0.94 981226 20 10541 1007786 1.04 1018327 21 9836 957812 1.02 967648 22 10105 942324 1.06 952429 23 9657 918784 1.04 928441 24 8862 882763 0.99 891625 25 9818 883563 1.10 893381 26 9251 877165 1.04 886416 27 9855 910721 1.07 920576 28 9294 886496 1.04 895790 29 9296 874603 1.05 883899 30 9381 850657 1.09 860038 31 9129 836098 1.08 845227 32 8749 820249 1.06 828998 33 9441 803395 1.16 812836 34 8865 797735 1.10 806600 35 9454 815351 1.15 824805 36 8713 807094 1.07 815807 37 8614 798191 1.07 806805 38 9233 817171 1.12 826404 39 9078 770404 1.16 779482 40 8687 784987 1.09 793674 41 9067 758576 1.18 767643 42 8902 757756 1.16 766658 43 8696 733710 1.17 742406 44 8179 733943 1.10 742122 45 8644 728373 1.17 737017 46 8425 735715 1.13 744140 47 8008 724675 1.09 732683 48 8114 708430 1.13 716544 49 7916 706146 1.11 714062 50 7909 700105 1.12 708014 51 7999 684106 1.16 692105 52 7628 652214 1.16 659842 53 7708 654861 1.16 662569 54 7199 638191 1.12 645390 55 7120 646203 1.09 653323 56 7391 636702 1.15 644093 57 7143 639500 1.10 646643 58 6738 626036 1.06 632774 59 6649 607069 1.08 613718 60 6330 617294 1.02 623624 61 6362 596658 1.06 603020 62 6141 593495 1.02 599636 63 5948 588465 1.00 594413 64 6101 573493 1.05 579594 65 5649 575403 0.97 581052 66 5905 561077 1.04 566982 67 5631 555258 1.00 560889 68 5800 568607 1.01 574407 69 5690 552746 1.02 558436 70 5680 542107 1.04 547787 71 5511 534914 1.02 540425 72 5815 529345 1.09 535160 73 5280 524494 1.00 529774 74 5095 524193 0.96 529288 75 5286 522156 1.00 527442 76 5127 506518 1.00 511645 77 5334 498801 1.06 504135 78 5261 500882 1.04 506143 79 5051 505698 0.99 510749 80 5048 490299 1.02 495347 81 5211 485942 1.06 491153 82 5031 483071 1.03 488102 83 4801 477880 0.99 482681 84 5087 473865 1.06 478952 85 4869 465030 1.04 469899 86 4591 461974 0.98 466565 87 4818 456790 1.04 461608 88 4475 446503 0.99 450978 89 4595 443547 1.03 448142 90 4505 443336 1.01 447841 91 4408 439926 0.99 444334 92 4343 435294 0.99 439637 93 4298 427568 1.00 431866 94 4253 419805 1.00 424058 95 4135 416364 0.98 420499 96 3945 409534 0.95 413479 97 3886 406193 0.95 410079 98 3384 382153 0.88 385537 99 2420 0 100.00 2420