Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-111_S29_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-111_S29_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 27014996
Paired-end alignments with a unique best hit 16766118
Pairs without alignments under any condition 5610754
Pairs that did not map uniquely 4638124
Genomic sequence context not extractable (edges of chromosomes) 65156

Cytosine Methylation

Total C's analysed 524809948
Methylated C's in CpG context 15833281
Methylated C's in CHG context 2489514
Methylated C's in CHH context 5221626
Methylated C's in Unknown context 168237
Unmethylated C's in CpG context 58351105
Unmethylated C's in CHG context 109756813
Unmethylated C's in CHH context 333157609
Unmethylated C's in Unknown context 2261184
Percentage methylation (CpG context) 21.3%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8299941 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 8401021 original bottom strand