CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 281546 457348 38.10 738894 2 261372 493904 34.61 755276 3 240042 430696 35.79 670738 4 246829 329521 42.83 576350 5 238211 276689 46.26 514900 6 234748 236587 49.80 471335 7 256031 230937 52.58 486968 8 120444 264505 31.29 384949 9 108196 244294 30.69 352490 10 109796 233575 31.98 343371 11 115074 238631 32.53 353705 12 110700 245163 31.11 355863 13 108038 249677 30.20 357715 14 100984 248652 28.88 349636 15 97490 250241 28.04 347731 16 88897 244900 26.63 333797 17 83950 238558 26.03 322508 18 85671 242581 26.10 328252 19 85384 246704 25.71 332088 20 85297 249532 25.47 334829 21 85810 251989 25.40 337799 22 84207 247971 25.35 332178 23 83336 246965 25.23 330301 24 82178 244983 25.12 327161 25 80184 243589 24.77 323773 26 80201 240271 25.03 320472 27 80806 245931 24.73 326737 28 82487 244175 25.25 326662 29 80317 248924 24.39 329241 30 79996 246303 24.52 326299 31 81128 241884 25.12 323012 32 80166 237567 25.23 317733 33 80128 239652 25.06 319780 34 81174 239309 25.33 320483 35 79106 237184 25.01 316290 36 78795 241899 24.57 320694 37 77452 236333 24.68 313785 38 76223 237952 24.26 314175 39 78774 239579 24.74 318353 40 79207 237012 25.05 316219 41 78446 238030 24.79 316476 42 79747 240854 24.87 320601 43 79300 241634 24.71 320934 44 78419 237764 24.80 316183 45 80168 237860 25.21 318028 46 79949 240275 24.97 320224 47 79773 235957 25.27 315730 48 79359 237839 25.02 317198 49 80877 236899 25.45 317776 50 78459 240717 24.58 319176 51 79161 239435 24.85 318596 52 79148 246680 24.29 325828 53 77367 235831 24.70 313198 54 77010 235765 24.62 312775 55 76293 229772 24.93 306065 56 75940 227998 24.99 303938 57 77065 231292 24.99 308357 58 77616 231053 25.15 308669 59 78638 230476 25.44 309114 60 77025 233735 24.79 310760 61 78248 229771 25.40 308019 62 75937 233442 24.54 309379 63 75363 231129 24.59 306492 64 75161 229052 24.71 304213 65 75320 226563 24.95 301883 66 75798 226247 25.09 302045 67 75313 221578 25.37 296891 68 73467 223091 24.77 296558 69 72267 220275 24.70 292542 70 72436 220112 24.76 292548 71 71557 217695 24.74 289252 72 71254 216866 24.73 288120 73 70383 215594 24.61 285977 74 69636 212466 24.68 282102 75 67883 211587 24.29 279470 76 68289 210563 24.49 278852 77 68528 208271 24.76 276799 78 68651 208840 24.74 277491 79 67165 206213 24.57 273378 80 65390 205880 24.11 271270 81 64681 204258 24.05 268939 82 64003 201808 24.08 265811 83 64909 202940 24.23 267849 84 64353 202930 24.08 267283 85 64119 200453 24.23 264572 86 62726 196660 24.18 259386 87 61336 195568 23.88 256904 88 61582 196276 23.88 257858 89 60427 192306 23.91 252733 90 60529 193222 23.85 253751 91 60189 190413 24.02 250602 92 58179 189557 23.48 247736 93 58350 189306 23.56 247656 94 58466 186362 23.88 244828 95 56928 185048 23.53 241976 96 57757 187015 23.60 244772 97 55493 179651 23.60 235144 98 52642 168790 23.77 221432 99 41054 132224 23.69 173278 100 53617 168939 24.09 222556 101 49068 167181 22.69 216249 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 417650 501078 45.46 918728 2 242612 457925 34.63 700537 3 98547 447557 18.05 546104 4 45055 460349 8.91 505404 5 27546 428650 6.04 456196 6 22501 417495 5.11 439996 7 17299 520100 3.22 537399 8 7591 560736 1.34 568327 9 6118 521730 1.16 527848 10 6381 496627 1.27 503008 11 6534 500057 1.29 506591 12 6383 502958 1.25 509341 13 5792 482327 1.19 488119 14 5211 482426 1.07 487637 15 5202 494983 1.04 500185 16 4502 494878 0.90 499380 17 4729 488389 0.96 493118 18 4797 490101 0.97 494898 19 4095 488710 0.83 492805 20 4198 512680 0.81 516878 21 4076 520891 0.78 524967 22 4281 514797 0.82 519078 23 4510 521041 0.86 525551 24 4162 526049 0.78 530211 25 4201 510499 0.82 514700 26 4891 515519 0.94 520410 27 4082 521325 0.78 525407 28 4004 517830 0.77 521834 29 4767 522887 0.90 527654 30 4147 528186 0.78 532333 31 3988 517638 0.76 521626 32 4026 519559 0.77 523585 33 4251 521852 0.81 526103 34 4155 513779 0.80 517934 35 4434 518736 0.85 523170 36 4130 520951 0.79 525081 37 4066 507072 0.80 511138 38 4437 514589 0.85 519026 39 4225 512983 0.82 517208 40 4122 509032 0.80 513154 41 4068 509764 0.79 513832 42 4038 516152 0.78 520190 43 4159 508330 0.81 512489 44 4049 514288 0.78 518337 45 4089 515723 0.79 519812 46 3959 509744 0.77 513703 47 4156 512065 0.81 516221 48 3971 522476 0.75 526447 49 4164 509718 0.81 513882 50 4199 509845 0.82 514044 51 4241 515717 0.82 519958 52 4257 513873 0.82 518130 53 4323 511432 0.84 515755 54 4450 520242 0.85 524692 55 4384 509551 0.85 513935 56 4517 514187 0.87 518704 57 4568 514757 0.88 519325 58 5155 507162 1.01 512317 59 4951 512278 0.96 517229 60 4985 517032 0.95 522017 61 4961 509153 0.96 514114 62 5044 513065 0.97 518109 63 5080 507312 0.99 512392 64 5152 505441 1.01 510593 65 5766 503446 1.13 509212 66 5288 497037 1.05 502325 67 5191 485897 1.06 491088 68 5421 488010 1.10 493431 69 5050 488586 1.02 493636 70 5096 482146 1.05 487242 71 5155 479654 1.06 484809 72 5117 480045 1.05 485162 73 5144 473103 1.08 478247 74 5275 471166 1.11 476441 75 5052 472269 1.06 477321 76 4834 459797 1.04 464631 77 5226 462744 1.12 467970 78 4875 456709 1.06 461584 79 4924 448698 1.09 453622 80 4931 447106 1.09 452037 81 4926 446112 1.09 451038 82 4822 437560 1.09 442382 83 4987 443157 1.11 448144 84 4989 444272 1.11 449261 85 5095 433521 1.16 438616 86 5115 436826 1.16 441941 87 4932 437651 1.11 442583 88 4968 427260 1.15 432228 89 5117 426439 1.19 431556 90 4963 426448 1.15 431411 91 5115 418571 1.21 423686 92 5112 419196 1.20 424308 93 5497 416996 1.30 422493 94 5385 409281 1.30 414666 95 5481 407700 1.33 413181 96 5550 404955 1.35 410505 97 5402 369198 1.44 374600 98 4799 338959 1.40 343758 99 3150 218464 1.42 221614 100 3504 221744 1.56 225248 101 7217 365732 1.94 372949 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 402464 585350 40.74 987814 2 191829 616555 23.73 808384 3 91429 754763 10.80 846192 4 74804 814724 8.41 889528 5 66229 971809 6.38 1038038 6 53332 1067343 4.76 1120675 7 46621 1358994 3.32 1405615 8 29402 1459993 1.97 1489395 9 22860 1345032 1.67 1367892 10 22900 1317181 1.71 1340081 11 26838 1318682 1.99 1345520 12 23518 1349169 1.71 1372687 13 26039 1381126 1.85 1407165 14 26525 1421560 1.83 1448085 15 24164 1467918 1.62 1492082 16 23309 1506573 1.52 1529882 17 25708 1518697 1.66 1544405 18 22722 1580055 1.42 1602777 19 23146 1614326 1.41 1637472 20 25913 1668409 1.53 1694322 21 23269 1674832 1.37 1698101 22 24725 1680577 1.45 1705302 23 26605 1682202 1.56 1708807 24 23140 1684577 1.36 1707717 25 24494 1694495 1.42 1718989 26 26255 1709642 1.51 1735897 27 23553 1714023 1.36 1737576 28 23339 1717195 1.34 1740534 29 26113 1715389 1.50 1741502 30 23270 1699643 1.35 1722913 31 23392 1677020 1.38 1700412 32 25179 1688507 1.47 1713686 33 23046 1681620 1.35 1704666 34 24937 1695527 1.45 1720464 35 26301 1684722 1.54 1711023 36 23023 1692928 1.34 1715951 37 23275 1684816 1.36 1708091 38 26224 1693063 1.53 1719287 39 23185 1686034 1.36 1709219 40 23632 1686679 1.38 1710311 41 26453 1695538 1.54 1721991 42 23964 1707855 1.38 1731819 43 24835 1688736 1.45 1713571 44 25676 1696168 1.49 1721844 45 23938 1689401 1.40 1713339 46 23716 1694860 1.38 1718576 47 25182 1686659 1.47 1711841 48 22497 1687926 1.32 1710423 49 23056 1670533 1.36 1693589 50 25102 1665629 1.48 1690731 51 22269 1654393 1.33 1676662 52 23631 1652113 1.41 1675744 53 25147 1643323 1.51 1668470 54 22393 1648080 1.34 1670473 55 23452 1647613 1.40 1671065 56 25353 1643305 1.52 1668658 57 22680 1658964 1.35 1681644 58 24605 1645620 1.47 1670225 59 25814 1660385 1.53 1686199 60 22748 1640411 1.37 1663159 61 24055 1632007 1.45 1656062 62 24971 1619665 1.52 1644636 63 22777 1606514 1.40 1629291 64 24082 1598357 1.48 1622439 65 24458 1597476 1.51 1621934 66 22570 1586186 1.40 1608756 67 23048 1578611 1.44 1601659 68 24252 1573501 1.52 1597753 69 22367 1563062 1.41 1585429 70 22657 1555195 1.44 1577852 71 24476 1548704 1.56 1573180 72 22287 1547430 1.42 1569717 73 23697 1526202 1.53 1549899 74 24250 1524936 1.57 1549186 75 21896 1512526 1.43 1534422 76 21911 1504912 1.44 1526823 77 24033 1493272 1.58 1517305 78 21000 1484488 1.39 1505488 79 21721 1474143 1.45 1495864 80 23413 1464994 1.57 1488407 81 21314 1451854 1.45 1473168 82 21970 1435814 1.51 1457784 83 22969 1439502 1.57 1462471 84 21189 1421575 1.47 1442764 85 20626 1407018 1.44 1427644 86 21820 1395285 1.54 1417105 87 19993 1387665 1.42 1407658 88 20103 1382458 1.43 1402561 89 21858 1369995 1.57 1391853 90 19798 1359134 1.44 1378932 91 20255 1344474 1.48 1364729 92 21344 1340349 1.57 1361693 93 19740 1331654 1.46 1351394 94 20128 1316800 1.51 1336928 95 21404 1304861 1.61 1326265 96 19347 1281882 1.49 1301229 97 19377 1245171 1.53 1264548 98 19845 1156816 1.69 1176661 99 12397 801030 1.52 813427 100 13043 715667 1.79 728710 101 19348 1167417 1.63 1186765 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 170696 225211 43.12 395907 2 154747 209226 42.52 363973 3 169556 233891 42.03 403447 4 160988 265434 37.75 426422 5 70966 328319 17.77 399285 6 39780 178199 18.25 217979 7 36963 191322 16.19 228285 8 38998 181371 17.70 220369 9 35720 162533 18.02 198253 10 39239 177330 18.12 216569 11 42057 171171 19.72 213228 12 40928 166924 19.69 207852 13 41470 162272 20.35 203742 14 43690 164277 21.01 207967 15 42365 151674 21.83 194039 16 41016 147290 21.78 188306 17 48218 159785 23.18 208003 18 47325 151954 23.75 199279 19 44857 147871 23.27 192728 20 42612 145244 22.68 187856 21 44838 143825 23.77 188663 22 43460 146331 22.90 189791 23 41424 141319 22.67 182743 24 39756 134679 22.79 174435 25 43153 140663 23.48 183816 26 40124 134873 22.93 174997 27 43709 136582 24.24 180291 28 40377 131602 23.48 171979 29 41489 136663 23.29 178152 30 40085 126164 24.11 166249 31 37814 128448 22.74 166262 32 37298 121346 23.51 158644 33 40059 123042 24.56 163101 34 39532 125483 23.96 165015 35 45645 131239 25.81 176884 36 40235 120349 25.06 160584 37 40588 124265 24.62 164853 38 36732 120544 23.36 157276 39 38491 117612 24.66 156103 40 39553 118095 25.09 157648 41 37150 114759 24.46 151909 42 37240 116358 24.25 153598 43 37593 115000 24.64 152593 44 34514 110708 23.77 145222 45 39612 116266 25.41 155878 46 33972 105738 24.32 139710 47 35650 106917 25.01 142567 48 34358 104479 24.75 138837 49 33416 106692 23.85 140108 50 32061 99829 24.31 131890 51 32129 98254 24.64 130383 52 32753 101118 24.47 133871 53 33445 98676 25.31 132121 54 31192 96706 24.39 127898 55 31030 95357 24.55 126387 56 29714 94413 23.94 124127 57 30071 91606 24.71 121677 58 29773 92091 24.43 121864 59 28855 87545 24.79 116400 60 29655 87871 25.23 117526 61 26632 86444 23.55 113076 62 26143 85214 23.48 111357 63 27556 83148 24.89 110704 64 26314 83642 23.93 109956 65 26107 79343 24.76 105450 66 27229 82114 24.90 109343 67 25545 81018 23.97 106563 68 26495 80980 24.65 107475 69 24483 77400 24.03 101883 70 24449 77773 23.92 102222 71 24674 73460 25.14 98134 72 24013 72883 24.78 96896 73 23511 74607 23.96 98118 74 22265 71201 23.82 93466 75 22533 71091 24.07 93624 76 22423 69515 24.39 91938 77 22013 68983 24.19 90996 78 21811 69546 23.87 91357 79 21135 67101 23.95 88236 80 20580 65742 23.84 86322 81 20620 65288 24.00 85908 82 20558 65262 23.95 85820 83 20306 62963 24.39 83269 84 21612 64992 24.95 86604 85 20050 62768 24.21 82818 86 19232 61649 23.78 80881 87 19195 60816 23.99 80011 88 18967 60737 23.80 79704 89 20070 59501 25.22 79571 90 19704 58619 25.16 78323 91 18885 57741 24.65 76626 92 18104 57513 23.94 75617 93 18325 57458 24.18 75783 94 18211 56379 24.41 74590 95 18470 55898 24.84 74368 96 17897 55215 24.48 73112 97 18767 56175 25.04 74942 98 16764 51570 24.53 68334 99 14977 0 100.00 14977 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 59548 327107 15.40 386655 2 63357 339875 15.71 403232 3 61482 344799 15.13 406281 4 65485 357604 15.48 423089 5 5223 646622 0.80 651845 6 3754 765570 0.49 769324 7 2373 419723 0.56 422096 8 2468 452156 0.54 454624 9 2273 387460 0.58 389733 10 2220 371272 0.59 373492 11 3010 459631 0.65 462641 12 2417 383635 0.63 386052 13 2402 383309 0.62 385711 14 2450 379575 0.64 382025 15 2500 358460 0.69 360960 16 2184 336521 0.64 338705 17 2509 361351 0.69 363860 18 2612 320583 0.81 323195 19 2409 319120 0.75 321529 20 2396 319494 0.74 321890 21 2744 305081 0.89 307825 22 2614 326156 0.80 328770 23 2453 324900 0.75 327353 24 2236 295605 0.75 297841 25 2405 300929 0.79 303334 26 2512 312130 0.80 314642 27 2358 291457 0.80 293815 28 2325 278664 0.83 280989 29 2556 296340 0.86 298896 30 2582 288558 0.89 291140 31 2314 280033 0.82 282347 32 2288 284171 0.80 286459 33 2464 308703 0.79 311167 34 2463 274455 0.89 276918 35 2382 279698 0.84 282080 36 2355 273587 0.85 275942 37 2291 259396 0.88 261687 38 2411 267397 0.89 269808 39 2305 257487 0.89 259792 40 2414 249065 0.96 251479 41 2485 247616 0.99 250101 42 2388 232540 1.02 234928 43 2621 239456 1.08 242077 44 2279 242191 0.93 244470 45 2266 222714 1.01 224980 46 2279 224946 1.00 227225 47 2407 231669 1.03 234076 48 2342 221450 1.05 223792 49 2242 223140 0.99 225382 50 2484 219655 1.12 222139 51 2247 206848 1.07 209095 52 2472 205754 1.19 208226 53 2990 226604 1.30 229594 54 2309 207771 1.10 210080 55 2322 205333 1.12 207655 56 2196 206278 1.05 208474 57 2235 195073 1.13 197308 58 1978 192625 1.02 194603 59 1754 198867 0.87 200621 60 1557 188777 0.82 190334 61 1405 189727 0.74 191132 62 1429 191883 0.74 193312 63 1487 192286 0.77 193773 64 1326 179372 0.73 180698 65 1370 185848 0.73 187218 66 1335 172231 0.77 173566 67 1280 181249 0.70 182529 68 1273 178586 0.71 179859 69 1288 175737 0.73 177025 70 1230 173257 0.70 174487 71 1307 175471 0.74 176778 72 1186 163384 0.72 164570 73 1199 163567 0.73 164766 74 1230 168433 0.72 169663 75 1113 162373 0.68 163486 76 1106 154422 0.71 155528 77 1155 162294 0.71 163449 78 1154 154397 0.74 155551 79 1130 153375 0.73 154505 80 1123 150257 0.74 151380 81 1100 144642 0.75 145742 82 1128 142837 0.78 143965 83 1136 145231 0.78 146367 84 966 138903 0.69 139869 85 1043 147807 0.70 148850 86 1051 138475 0.75 139526 87 1014 137143 0.73 138157 88 1011 132206 0.76 133217 89 1110 140699 0.78 141809 90 1104 133376 0.82 134480 91 1096 135868 0.80 136964 92 1007 132508 0.75 133515 93 948 127671 0.74 128619 94 1004 125978 0.79 126982 95 1090 128663 0.84 129753 96 1060 121608 0.86 122668 97 998 121203 0.82 122201 98 821 116306 0.70 117127 99 614 0 100.00 614 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 94431 482827 16.36 577258 2 77528 405011 16.07 482539 3 79524 408645 16.29 488169 4 79166 398524 16.57 477690 5 12866 738659 1.71 751525 6 12692 1025313 1.22 1038005 7 14275 1345520 1.05 1359795 8 13703 1337876 1.01 1351579 9 14474 1259087 1.14 1273561 10 14197 1287211 1.09 1301408 11 14068 1263504 1.10 1277572 12 13427 1179370 1.13 1192797 13 13252 1211566 1.08 1224818 14 13928 1217886 1.13 1231814 15 13101 1220861 1.06 1233962 16 12466 1164894 1.06 1177360 17 13441 1163991 1.14 1177432 18 12956 1157678 1.11 1170634 19 12052 1091801 1.09 1103853 20 13318 1127947 1.17 1141265 21 12357 1073153 1.14 1085510 22 13181 1055928 1.23 1069109 23 12477 1028875 1.20 1041352 24 11597 990609 1.16 1002206 25 12664 995418 1.26 1008082 26 11693 984020 1.17 995713 27 12471 1023513 1.20 1035984 28 11987 991393 1.19 1003380 29 11923 976770 1.21 988693 30 12336 952601 1.28 964937 31 11788 937040 1.24 948828 32 11156 917842 1.20 928998 33 12104 898085 1.33 910189 34 11268 891973 1.25 903241 35 12213 912080 1.32 924293 36 11020 903587 1.20 914607 37 11109 889444 1.23 900553 38 11864 911919 1.28 923783 39 11477 857084 1.32 868561 40 11228 876557 1.26 887785 41 11378 845305 1.33 856683 42 11291 846204 1.32 857495 43 11418 819384 1.37 830802 44 10503 818947 1.27 829450 45 10892 813242 1.32 824134 46 10645 819176 1.28 829821 47 10080 806505 1.23 816585 48 10285 787165 1.29 797450 49 10232 784900 1.29 795132 50 9874 779209 1.25 789083 51 9942 762245 1.29 772187 52 9572 724157 1.30 733729 53 9805 726893 1.33 736698 54 9152 708037 1.28 717189 55 9117 717604 1.25 726721 56 9290 706474 1.30 715764 57 8949 708970 1.25 717919 58 8476 693036 1.21 701512 59 8641 673102 1.27 681743 60 8151 686272 1.17 694423 61 8487 660297 1.27 668784 62 7922 655742 1.19 663664 63 7557 650894 1.15 658451 64 7894 633325 1.23 641219 65 7486 636264 1.16 643750 66 7593 617689 1.21 625282 67 7257 614233 1.17 621490 68 7351 628955 1.16 636306 69 7436 609879 1.20 617315 70 7190 598553 1.19 605743 71 7019 592047 1.17 599066 72 7521 582130 1.28 589651 73 7069 578732 1.21 585801 74 6713 577325 1.15 584038 75 6958 574088 1.20 581046 76 6654 555983 1.18 562637 77 6998 550433 1.26 557431 78 6697 550405 1.20 557102 79 6696 555977 1.19 562673 80 6655 536531 1.23 543186 81 6814 534001 1.26 540815 82 6632 528037 1.24 534669 83 6302 524057 1.19 530359 84 6573 518716 1.25 525289 85 6122 508878 1.19 515000 86 5957 507337 1.16 513294 87 6126 498576 1.21 504702 88 5945 489758 1.20 495703 89 5877 486234 1.19 492111 90 5991 483365 1.22 489356 91 5612 479078 1.16 484690 92 5453 476168 1.13 481621 93 5546 467698 1.17 473244 94 5410 456870 1.17 462280 95 5502 455495 1.19 460997 96 5190 447718 1.15 452908 97 5049 441891 1.13 446940 98 4452 418104 1.05 422556 99 3075 0 100.00 3075