Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-104_S28_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-104_S28_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 30015261
Paired-end alignments with a unique best hit 18880850
Pairs without alignments under any condition 5947034
Pairs that did not map uniquely 5187377
Genomic sequence context not extractable (edges of chromosomes) 61439

Cytosine Methylation

Total C's analysed 589822412
Methylated C's in CpG context 18751306
Methylated C's in CHG context 2772707
Methylated C's in CHH context 6568341
Methylated C's in Unknown context 206436
Unmethylated C's in CpG context 62277020
Unmethylated C's in CHG context 124556422
Unmethylated C's in CHH context 374896616
Unmethylated C's in Unknown context 2853303
Percentage methylation (CpG context) 23.1%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 9381792 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 9437619 original bottom strand