EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10731060 lines in total Total number of methylation call strings processed: 21462120 Final Cytosine Methylation Report ================================= Total number of C's analysed: 254979684 Total methylated C's in CpG context: 8382494 Total methylated C's in CHG context: 1214264 Total methylated C's in CHH context: 2969621 Total C to T conversions in CpG context: 27227884 Total C to T conversions in CHG context: 52651156 Total C to T conversions in CHH context: 162534265 C methylated in CpG context: 23.5% C methylated in CHG context: 2.3% C methylated in CHH context: 1.8%