CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 185185 351200 34.52 536385 2 169352 373007 31.23 542359 3 156869 328943 32.29 485812 4 157501 250785 38.58 408286 5 149962 217872 40.77 367834 6 147454 185914 44.23 333368 7 160287 179675 47.15 339962 8 75555 208818 26.57 284373 9 68957 190495 26.58 259452 10 68793 181767 27.46 250560 11 71032 185726 27.66 256758 12 68753 187877 26.79 256630 13 66289 190635 25.80 256924 14 62885 189701 24.90 252586 15 60178 189700 24.08 249878 16 56127 187563 23.03 243690 17 53503 181435 22.77 234938 18 55305 184559 23.06 239864 19 54649 187081 22.61 241730 20 54765 189056 22.46 243821 21 55684 191853 22.50 247537 22 54461 188823 22.39 243284 23 53666 188239 22.18 241905 24 53216 186841 22.17 240057 25 51706 186045 21.75 237751 26 52302 183680 22.16 235982 27 52475 189218 21.71 241693 28 54327 188951 22.33 243278 29 52488 190587 21.59 243075 30 52173 188181 21.71 240354 31 52436 185290 22.06 237726 32 51740 182085 22.13 233825 33 52338 184678 22.08 237016 34 53577 184124 22.54 237701 35 51864 182804 22.10 234668 36 50698 185432 21.47 236130 37 49993 181223 21.62 231216 38 49691 181612 21.48 231303 39 51641 183956 21.92 235597 40 51125 181574 21.97 232699 41 51000 183024 21.79 234024 42 51979 186189 21.82 238168 43 51176 185348 21.64 236524 44 51260 182780 21.90 234040 45 52045 182876 22.15 234921 46 52625 185039 22.14 237664 47 51311 181711 22.02 233022 48 50934 183320 21.74 234254 49 52882 183629 22.36 236511 50 51048 184977 21.63 236025 51 51941 184011 22.01 235952 52 51524 189065 21.42 240589 53 49966 181606 21.58 231572 54 49941 180043 21.71 229984 55 49859 176549 22.02 226408 56 49842 175989 22.07 225831 57 50344 178188 22.03 228532 58 51386 178271 22.38 229657 59 51761 177076 22.62 228837 60 50061 179113 21.84 229174 61 51045 176003 22.48 227048 62 49745 178978 21.75 228723 63 49117 177642 21.66 226759 64 48980 176537 21.72 225517 65 49627 175512 22.04 225139 66 50342 175852 22.26 226194 67 49827 172671 22.39 222498 68 48403 172911 21.87 221314 69 47906 170406 21.94 218312 70 47330 170651 21.71 217981 71 47197 168432 21.89 215629 72 46962 169358 21.71 216320 73 46930 166515 21.99 213445 74 46271 166402 21.76 212673 75 44970 165344 21.38 210314 76 45186 165234 21.47 210420 77 45840 162791 21.97 208631 78 45441 164029 21.69 209470 79 44559 162008 21.57 206567 80 43700 161524 21.29 205224 81 43678 159872 21.46 203550 82 42552 158915 21.12 201467 83 43157 160768 21.16 203925 84 43259 160426 21.24 203685 85 43137 158181 21.43 201318 86 41982 155795 21.23 197777 87 41217 155716 20.93 196933 88 42126 155353 21.33 197479 89 40731 153123 21.01 193854 90 40520 154015 20.83 194535 91 40383 150726 21.13 191109 92 39606 149974 20.89 189580 93 39765 150248 20.93 190013 94 39435 148193 21.02 187628 95 38468 146670 20.78 185138 96 38974 149334 20.70 188308 97 37956 142756 21.00 180712 98 35078 136033 20.50 171111 99 28121 107787 20.69 135908 100 36029 135085 21.06 171114 101 32440 133569 19.54 166009 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 287087 354041 44.78 641128 2 169750 315581 34.98 485331 3 65073 307637 17.46 372710 4 29458 323574 8.34 353032 5 17518 302905 5.47 320423 6 14703 289732 4.83 304435 7 11109 371434 2.90 382543 8 4933 402766 1.21 407699 9 4132 374543 1.09 378675 10 4055 354140 1.13 358195 11 4269 355588 1.19 359857 12 4032 357360 1.12 361392 13 3695 341960 1.07 345655 14 3416 342012 0.99 345428 15 3323 350706 0.94 354029 16 2958 349393 0.84 352351 17 3171 345848 0.91 349019 18 3275 343750 0.94 347025 19 2737 345577 0.79 348314 20 2799 364154 0.76 366953 21 2824 368071 0.76 370895 22 3008 362685 0.82 365693 23 3063 367825 0.83 370888 24 2821 371324 0.75 374145 25 2858 358433 0.79 361291 26 3249 361455 0.89 364704 27 2865 367313 0.77 370178 28 2822 365524 0.77 368346 29 3204 369566 0.86 372770 30 2908 373707 0.77 376615 31 2706 365189 0.74 367895 32 2739 368702 0.74 371441 33 2781 367847 0.75 370628 34 2751 363473 0.75 366224 35 2980 365874 0.81 368854 36 2894 366904 0.78 369798 37 2713 357659 0.75 360372 38 2962 362445 0.81 365407 39 2811 362236 0.77 365047 40 2803 360656 0.77 363459 41 2807 361735 0.77 364542 42 2773 364218 0.76 366991 43 2675 359334 0.74 362009 44 2760 365286 0.75 368046 45 2726 364608 0.74 367334 46 2827 360505 0.78 363332 47 2808 361982 0.77 364790 48 2739 368802 0.74 371541 49 2769 359831 0.76 362600 50 2911 361997 0.80 364908 51 2925 365871 0.79 368796 52 3007 363086 0.82 366093 53 2951 361274 0.81 364225 54 2944 368124 0.79 371068 55 3008 362092 0.82 365100 56 2967 363814 0.81 366781 57 3116 363604 0.85 366720 58 3473 359948 0.96 363421 59 3259 364581 0.89 367840 60 3242 367537 0.87 370779 61 3323 362642 0.91 365965 62 3484 364577 0.95 368061 63 3446 361042 0.95 364488 64 3427 359037 0.95 362464 65 3749 358353 1.04 362102 66 3525 353899 0.99 357424 67 3485 346451 1.00 349936 68 3764 350654 1.06 354418 69 3472 350525 0.98 353997 70 3487 345619 1.00 349106 71 3363 344429 0.97 347792 72 3467 345532 0.99 348999 73 3414 339920 0.99 343334 74 3447 339004 1.01 342451 75 3438 340828 1.00 344266 76 3367 331552 1.01 334919 77 3456 334615 1.02 338071 78 3408 329664 1.02 333072 79 3359 324783 1.02 328142 80 3432 323607 1.05 327039 81 3311 323214 1.01 326525 82 3328 317440 1.04 320768 83 3382 322942 1.04 326324 84 3447 323291 1.05 326738 85 3446 316009 1.08 319455 86 3490 318463 1.08 321953 87 3329 318771 1.03 322100 88 3358 312267 1.06 315625 89 3450 311251 1.10 314701 90 3451 312426 1.09 315877 91 3492 306590 1.13 310082 92 3669 307637 1.18 311306 93 3728 305399 1.21 309127 94 3678 299815 1.21 303493 95 3757 298919 1.24 302676 96 3777 297143 1.26 300920 97 3660 271319 1.33 274979 98 3350 250537 1.32 253887 99 2188 162427 1.33 164615 100 2425 165333 1.45 167758 101 4649 268320 1.70 272969 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 260381 375839 40.93 636220 2 124885 397938 23.89 522823 3 59723 510258 10.48 569981 4 49203 562475 8.04 611678 5 43245 678850 5.99 722095 6 34781 756757 4.39 791538 7 29693 977666 2.95 1007359 8 19292 1059435 1.79 1078727 9 15213 964936 1.55 980149 10 15016 940456 1.57 955472 11 17520 944469 1.82 961989 12 15698 961874 1.61 977572 13 17225 984517 1.72 1001742 14 17863 1011757 1.73 1029620 15 16370 1036946 1.55 1053316 16 15764 1059739 1.47 1075503 17 17434 1067800 1.61 1085234 18 15621 1107665 1.39 1123286 19 15406 1131213 1.34 1146619 20 17495 1165428 1.48 1182923 21 15643 1166738 1.32 1182381 22 16857 1165960 1.43 1182817 23 17997 1166784 1.52 1184781 24 15861 1171176 1.34 1187037 25 16704 1180147 1.40 1196851 26 17774 1186345 1.48 1204119 27 16195 1193501 1.34 1209696 28 16043 1195978 1.32 1212021 29 17774 1190014 1.47 1207788 30 15917 1178719 1.33 1194636 31 15538 1164566 1.32 1180104 32 17051 1172013 1.43 1189064 33 15669 1169593 1.32 1185262 34 17150 1178217 1.43 1195367 35 17626 1169372 1.48 1186998 36 15793 1181284 1.32 1197077 37 15753 1177134 1.32 1192887 38 17730 1181997 1.48 1199727 39 15405 1176155 1.29 1191560 40 16210 1172207 1.36 1188417 41 18037 1179581 1.51 1197618 42 16508 1188134 1.37 1204642 43 16858 1173748 1.42 1190606 44 17197 1183697 1.43 1200894 45 16366 1174427 1.37 1190793 46 16389 1180336 1.37 1196725 47 17182 1179255 1.44 1196437 48 15548 1178682 1.30 1194230 49 15662 1167091 1.32 1182753 50 17209 1164879 1.46 1182088 51 15420 1154143 1.32 1169563 52 16149 1152466 1.38 1168615 53 17105 1147204 1.47 1164309 54 15544 1151250 1.33 1166794 55 16100 1150793 1.38 1166893 56 17208 1148529 1.48 1165737 57 15483 1166286 1.31 1181769 58 17257 1156173 1.47 1173430 59 17647 1165871 1.49 1183518 60 15378 1151303 1.32 1166681 61 16533 1145475 1.42 1162008 62 17017 1137918 1.47 1154935 63 15697 1130344 1.37 1146041 64 16291 1127141 1.42 1143432 65 16846 1125729 1.47 1142575 66 15444 1118273 1.36 1133717 67 15525 1113525 1.38 1129050 68 16695 1110266 1.48 1126961 69 15242 1105960 1.36 1121202 70 15444 1101628 1.38 1117072 71 16879 1099235 1.51 1116114 72 15364 1097219 1.38 1112583 73 16493 1086725 1.49 1103218 74 16642 1083033 1.51 1099675 75 15241 1078290 1.39 1093531 76 15272 1073051 1.40 1088323 77 16529 1066049 1.53 1082578 78 14564 1058434 1.36 1072998 79 14963 1053523 1.40 1068486 80 16231 1050965 1.52 1067196 81 15021 1038188 1.43 1053209 82 15519 1029825 1.48 1045344 83 16207 1033388 1.54 1049595 84 14663 1019798 1.42 1034461 85 14318 1010727 1.40 1025045 86 15418 1003370 1.51 1018788 87 13865 999860 1.37 1013725 88 14033 996795 1.39 1010828 89 15218 987531 1.52 1002749 90 14123 982759 1.42 996882 91 13962 974984 1.41 988946 92 15031 970314 1.53 985345 93 13994 963780 1.43 977774 94 14247 955783 1.47 970030 95 15200 946460 1.58 961660 96 13638 929276 1.45 942914 97 13638 905635 1.48 919273 98 13917 843443 1.62 857360 99 8975 589267 1.50 598242 100 9121 526888 1.70 536009 101 13512 852215 1.56 865727 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 120075 180752 39.91 300827 2 107284 166516 39.18 273800 3 117744 185300 38.85 303044 4 114010 209498 35.24 323508 5 47271 264650 15.15 311921 6 27443 141599 16.23 169042 7 25188 150952 14.30 176140 8 26145 145065 15.27 171210 9 24045 128568 15.76 152613 10 27135 141112 16.13 168247 11 28032 136834 17.00 164866 12 27935 132715 17.39 160650 13 28324 130222 17.86 158546 14 29889 132927 18.36 162816 15 28892 121808 19.17 150700 16 28048 118222 19.18 146270 17 33021 127010 20.63 160031 18 32192 121990 20.88 154182 19 31081 119425 20.65 150506 20 29403 116622 20.14 146025 21 30669 115709 20.95 146378 22 30005 117782 20.30 147787 23 28532 113151 20.14 141683 24 27794 109468 20.25 137262 25 29846 113536 20.82 143382 26 27692 109610 20.17 137302 27 29956 109478 21.48 139434 28 27668 105746 20.74 133414 29 28397 109642 20.57 138039 30 27994 102525 21.45 130519 31 26711 105324 20.23 132035 32 25802 98576 20.74 124378 33 27949 100131 21.82 128080 34 27644 103452 21.09 131096 35 31631 108871 22.51 140502 36 27603 99067 21.79 126670 37 27835 100972 21.61 128807 38 26232 98203 21.08 124435 39 26921 96272 21.85 123193 40 28074 96882 22.47 124956 41 25925 94616 21.51 120541 42 25966 97267 21.07 123233 43 26164 94526 21.68 120690 44 24780 91301 21.35 116081 45 28208 97847 22.38 126055 46 24163 87661 21.61 111824 47 24991 89438 21.84 114429 48 24316 87910 21.67 112226 49 23520 89807 20.75 113327 50 22626 83242 21.37 105868 51 22954 82128 21.84 105082 52 23488 85275 21.60 108763 53 23081 81858 21.99 104939 54 22625 82242 21.57 104867 55 22482 79954 21.95 102436 56 21265 79572 21.09 100837 57 22017 77115 22.21 99132 58 21484 78191 21.55 99675 59 20888 74324 21.94 95212 60 21243 74859 22.10 96102 61 18941 73457 20.50 92398 62 19145 71489 21.12 90634 63 19978 70653 22.04 90631 64 19466 70751 21.58 90217 65 18748 67043 21.85 85791 66 19729 69632 22.08 89361 67 18450 69270 21.03 87720 68 19095 70019 21.43 89114 69 17759 66762 21.01 84521 70 17836 66008 21.27 83844 71 18054 62440 22.43 80494 72 17309 61886 21.86 79195 73 17115 62645 21.46 79760 74 16131 61029 20.91 77160 75 16608 60987 21.40 77595 76 16262 59144 21.57 75406 77 15873 59102 21.17 74975 78 16241 59490 21.45 75731 79 15280 56911 21.17 72191 80 15140 55981 21.29 71121 81 14987 55972 21.12 70959 82 15025 55718 21.24 70743 83 15088 53566 21.98 68654 84 15910 56074 22.10 71984 85 14748 53842 21.50 68590 86 14332 53104 21.25 67436 87 14318 51880 21.63 66198 88 14403 52020 21.68 66423 89 14717 51786 22.13 66503 90 14572 50771 22.30 65343 91 14080 50036 21.96 64116 92 13389 49074 21.44 62463 93 13604 49630 21.51 63234 94 13978 49268 22.10 63246 95 13702 47912 22.24 61614 96 13049 47642 21.50 60691 97 13704 47944 22.23 61648 98 12420 44481 21.83 56901 99 11131 0 100.00 11131 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 44724 238008 15.82 282732 2 47974 244607 16.40 292581 3 44723 248453 15.25 293176 4 49502 260472 15.97 309974 5 3528 473299 0.74 476827 6 2731 565114 0.48 567845 7 1669 308203 0.54 309872 8 1773 330716 0.53 332489 9 1636 285144 0.57 286780 10 1682 272067 0.61 273749 11 2236 337911 0.66 340147 12 1744 283282 0.61 285026 13 1789 284054 0.63 285843 14 1732 278116 0.62 279848 15 1806 265149 0.68 266955 16 1638 250514 0.65 252152 17 1878 265440 0.70 267318 18 1942 238586 0.81 240528 19 1720 236704 0.72 238424 20 1588 236501 0.67 238089 21 1933 226875 0.84 228808 22 1657 242456 0.68 244113 23 1688 239663 0.70 241351 24 1554 221890 0.70 223444 25 1584 224947 0.70 226531 26 1736 233347 0.74 235083 27 1639 218143 0.75 219782 28 1557 209345 0.74 210902 29 1655 222640 0.74 224295 30 1691 215209 0.78 216900 31 1577 208634 0.75 210211 32 1581 213413 0.74 214994 33 1628 233930 0.69 235558 34 1519 208121 0.72 209640 35 1650 210395 0.78 212045 36 1606 208195 0.77 209801 37 1428 195917 0.72 197345 38 1593 203167 0.78 204760 39 1593 196324 0.80 197917 40 1542 189414 0.81 190956 41 1636 187544 0.86 189180 42 1537 176716 0.86 178253 43 1596 183471 0.86 185067 44 1499 185329 0.80 186828 45 1469 171277 0.85 172746 46 1438 171359 0.83 172797 47 1640 176398 0.92 178038 48 1474 169601 0.86 171075 49 1498 171733 0.86 173231 50 1541 169499 0.90 171040 51 1540 158589 0.96 160129 52 1581 158542 0.99 160123 53 1915 174269 1.09 176184 54 1562 159101 0.97 160663 55 1579 159099 0.98 160678 56 1442 159147 0.90 160589 57 1584 150717 1.04 152301 58 1409 151124 0.92 152533 59 1278 153957 0.82 155235 60 1211 146827 0.82 148038 61 1102 147611 0.74 148713 62 1128 149732 0.75 150860 63 1078 150989 0.71 152067 64 941 139169 0.67 140110 65 1102 144591 0.76 145693 66 954 133758 0.71 134712 67 974 142786 0.68 143760 68 985 139342 0.70 140327 69 960 137620 0.69 138580 70 885 136205 0.65 137090 71 973 138070 0.70 139043 72 897 129708 0.69 130605 73 880 128462 0.68 129342 74 897 131893 0.68 132790 75 906 125991 0.71 126897 76 852 121203 0.70 122055 77 919 128210 0.71 129129 78 878 122686 0.71 123564 79 967 121281 0.79 122248 80 831 118945 0.69 119776 81 823 113752 0.72 114575 82 821 113197 0.72 114018 83 897 115128 0.77 116025 84 774 109818 0.70 110592 85 808 117908 0.68 118716 86 827 110109 0.75 110936 87 847 109252 0.77 110099 88 764 105206 0.72 105970 89 886 111682 0.79 112568 90 816 107752 0.75 108568 91 759 108778 0.69 109537 92 749 106067 0.70 106816 93 745 101891 0.73 102636 94 730 100172 0.72 100902 95 770 102196 0.75 102966 96 826 97969 0.84 98795 97 746 96446 0.77 97192 98 626 92853 0.67 93479 99 466 0 100.00 466 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 67982 334599 16.89 402581 2 56969 284573 16.68 341542 3 58382 289689 16.77 348071 4 58249 280935 17.17 339184 5 8453 530835 1.57 539288 6 8981 737390 1.20 746371 7 9770 977576 0.99 987346 8 9354 971666 0.95 981020 9 10183 914729 1.10 924912 10 9711 933331 1.03 943042 11 9634 913381 1.04 923015 12 9451 852681 1.10 862132 13 9202 878874 1.04 888076 14 9416 885557 1.05 894973 15 9178 886719 1.02 895897 16 8530 849221 0.99 857751 17 9277 851544 1.08 860821 18 9006 848319 1.05 857325 19 8208 801362 1.01 809570 20 9333 831904 1.11 841237 21 8784 787699 1.10 796483 22 9084 772655 1.16 781739 23 8665 754277 1.14 762942 24 8149 728191 1.11 736340 25 8754 727901 1.19 736655 26 8012 726411 1.09 734423 27 8677 757867 1.13 766544 28 8258 733916 1.11 742174 29 8164 725453 1.11 733617 30 8402 707354 1.17 715756 31 8224 696020 1.17 704244 32 7683 679756 1.12 687439 33 8273 666666 1.23 674939 34 7805 663497 1.16 671302 35 8391 680908 1.22 689299 36 7688 676037 1.12 683725 37 7821 664403 1.16 672224 38 8356 681816 1.21 690172 39 8073 643238 1.24 651311 40 7862 659146 1.18 667008 41 8048 636401 1.25 644449 42 8051 637863 1.25 645914 43 7769 612820 1.25 620589 44 7112 614181 1.14 621293 45 7691 610441 1.24 618132 46 7398 615994 1.19 623392 47 7138 607092 1.16 614230 48 7412 593414 1.23 600826 49 7091 592200 1.18 599291 50 7101 586891 1.20 593992 51 7134 573176 1.23 580310 52 6621 549835 1.19 556456 53 6746 551052 1.21 557798 54 6440 537258 1.18 543698 55 6285 546234 1.14 552519 56 6447 538774 1.18 545221 57 6365 539727 1.17 546092 58 6026 529790 1.12 535816 59 6281 514018 1.21 520299 60 5919 522205 1.12 528124 61 5933 502552 1.17 508485 62 5764 499574 1.14 505338 63 5588 496298 1.11 501886 64 5634 485379 1.15 491013 65 5501 486860 1.12 492361 66 5539 474108 1.15 479647 67 5347 470715 1.12 476062 68 5339 482034 1.10 487373 69 5453 468943 1.15 474396 70 5263 458934 1.13 464197 71 5059 454133 1.10 459192 72 5412 447084 1.20 452496 73 5131 443333 1.14 448464 74 4879 443135 1.09 448014 75 5043 442215 1.13 447258 76 4741 428299 1.09 433040 77 5207 424329 1.21 429536 78 4941 425778 1.15 430719 79 4794 428971 1.11 433765 80 4899 416911 1.16 421810 81 4947 413360 1.18 418307 82 4699 408981 1.14 413680 83 4560 406963 1.11 411523 84 4835 405133 1.18 409968 85 4600 395007 1.15 399607 86 4428 394809 1.11 399237 87 4496 388121 1.15 392617 88 4337 380506 1.13 384843 89 4329 378981 1.13 383310 90 4360 375947 1.15 380307 91 4289 372772 1.14 377061 92 4061 370505 1.08 374566 93 4187 363681 1.14 367868 94 4006 356783 1.11 360789 95 4068 353452 1.14 357520 96 3908 348834 1.11 352742 97 3651 346323 1.04 349974 98 3248 326225 0.99 329473 99 2379 0 100.00 2379