Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-103_S27_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-103_S27_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 20349659
Paired-end alignments with a unique best hit 12977162
Pairs without alignments under any condition 3894864
Pairs that did not map uniquely 3477633
Genomic sequence context not extractable (edges of chromosomes) 44102

Cytosine Methylation

Total C's analysed 419574489
Methylated C's in CpG context 11960087
Methylated C's in CHG context 1859179
Methylated C's in CHH context 4407382
Methylated C's in Unknown context 133883
Unmethylated C's in CpG context 48746427
Unmethylated C's in CHG context 89139817
Unmethylated C's in CHH context 263461597
Unmethylated C's in Unknown context 1893108
Percentage methylation (CpG context) 19.7%
Percentage methylation (CHG context) 2.0%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6444532 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6488528 original bottom strand