File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6566	1666	1740	28	98	6468	158997	4436	17626	739	32014	5038	99144
EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6534	1621	1831	14	81	6453	150459	4789	15379	739	29587	5848	94117
EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6413	1698	1862	27	68	6345	146763	4539	15475	762	29050	4818	92119
EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6557	1673	1744	26	131	6426	156309	4466	17609	810	30781	5412	97231
EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6381	1792	1810	17	83	6298	158937	4339	20541	812	31741	4712	96792
EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6484	1703	1785	28	73	6411	154900	4750	16419	793	30733	5585	96620
EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6570	1609	1810	11	77	6493	159190	4828	17628	811	31434	5724	98765
EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6539	1667	1769	25	89	6450	157580	4920	17284	809	31012	5464	98091
EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6308	1708	1962	22	104	6204	142620	4259	15531	861	27686	6377	87906
EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6210	1933	1835	22	97	6113	141866	3921	15676	732	28147	5272	88118
EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6301	1939	1750	10	53	6248	148693	4656	15651	770	29822	5761	92033
EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6395	1818	1770	17	93	6302	152960	4557	16958	895	30544	5049	94957
EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	5988	2195	1788	29	28	5960	138919	4791	15288	716	28286	7003	82835
EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	5726	2446	1798	30	41	5685	130451	4328	13789	732	25759	6589	79254
EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	6086	2055	1815	44	66	6020	135404	4296	15179	766	27307	8678	79178
EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	5635	2748	1577	40	33	5602	126843	4151	12942	679	25201	6544	77326
EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	6199	1843	1921	37	78	6121	140286	4621	14709	849	27803	8083	84221
EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	5615	2476	1867	42	80	5535	121757	3683	13426	711	23765	7920	72252
EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	5264	3106	1605	25	42	5222	112022	3325	12163	696	21730	7698	66410
EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	5446	2823	1704	27	55	5391	115647	3443	12030	749	22526	8463	68436
EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	6307	1856	1798	39	34	6273	148341	4698	15600	1027	30102	7123	89791
EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	6048	2103	1820	29	58	5990	139918	4538	16018	753	28711	7048	82850
EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	5889	2195	1899	17	40	5849	129427	3850	14191	801	26093	8483	76009
EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.bam	10000	5499	2776	1683	42	69	5430	116993	3289	13175	754	22791	7877	69107
EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	6224	2031	1715	30	58	6166	142689	4367	15265	800	28891	7055	86311
EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	5601	2748	1609	42	59	5542	129022	3780	15383	600	25536	5499	78224
EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	6052	2168	1742	38	78	5974	144951	4698	16513	794	29561	6888	86497
EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	6189	2029	1747	35	110	6079	142480	4268	15025	758	28932	6217	87280
EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	6124	1991	1841	44	72	6052	136356	4076	14809	750	27762	7495	81464
EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	6098	1970	1879	53	73	6025	139703	4024	16618	846	28366	9549	80300
EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	6367	1731	1873	29	64	6303	147030	4930	16006	870	29978	7655	87591
EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	5648	2521	1809	22	53	5595	118315	3455	13141	743	23068	7730	70178
EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	5721	2468	1775	36	51	5670	122182	3612	12685	745	23942	7957	73241
EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	6271	1918	1783	28	34	6237	151678	5329	15943	770	30790	7625	91221
EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	5806	2259	1899	36	25	5781	129089	4413	13577	825	25634	8954	75686
EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.bam	10000	5938	2104	1938	20	38	5900	125539	4113	12207	805	24688	8542	75184
EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	5534	2442	1998	26	52	5482	114572	3716	12219	868	21906	9505	66358
EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	6058	1898	2017	27	33	6025	132010	4142	15617	817	26192	8090	77152
EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	5634	2558	1777	31	83	5551	115980	3196	12076	763	22936	8084	68925
EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	6132	1905	1943	20	47	6085	137497	4581	15597	810	27779	7064	81666
EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	5826	2362	1778	34	61	5765	131530	4057	14103	764	26141	6831	79634
EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	6027	2014	1925	34	43	5984	131148	4621	13500	872	26149	7481	78525
EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	6180	1855	1936	29	66	6114	138187	4310	15507	855	27620	7952	81943
EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	6023	1911	2037	29	38	5985	130473	4314	13600	884	25431	8541	77703
EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	6307	1677	1973	43	70	6237	147138	4844	15892	856	29298	8684	87564
EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	6291	1859	1828	22	38	6253	141005	4747	14402	824	27698	9029	84305
EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	6101	1989	1887	23	40	6061	135719	4464	15758	810	27454	7099	80134
EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.bam	10000	5483	2727	1767	23	46	5437	116536	3524	12987	669	22778	7116	69462
EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	5882	2213	1871	34	31	5851	128811	4366	12746	851	25232	9460	76156
EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6149	1925	1897	29	22	6127	131176	4643	12604	875	25715	8664	78675
EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6188	1863	1927	22	15	6173	135440	4721	13281	794	26359	8288	81997
EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.bam	10000	6136	1937	1903	24	17	6119	130797	4929	12034	796	25286	8252	79500