EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6119 lines in total Total number of methylation call strings processed: 12238 Final Cytosine Methylation Report ================================= Total number of C's analysed: 130797 Total methylated C's in CpG context: 4929 Total methylated C's in CHG context: 796 Total methylated C's in CHH context: 8252 Total C to T conversions in CpG context: 12034 Total C to T conversions in CHG context: 25286 Total C to T conversions in CHH context: 79500 C methylated in CpG context: 29.1% C methylated in CHG context: 3.1% C methylated in CHH context: 9.4%