Total number of alignments analysed in /gscratch/srlab/strigg/analyses/20181011/EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.bam:	5882
Total number duplicated alignments removed:	31 (0.53%)
Duplicated alignments were found at:	21 different position(s)

Total count of deduplicated leftover sequences: 5851 (99.47% of total)