EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6237 lines in total Total number of methylation call strings processed: 12474 Final Cytosine Methylation Report ================================= Total number of C's analysed: 147138 Total methylated C's in CpG context: 4844 Total methylated C's in CHG context: 856 Total methylated C's in CHH context: 8684 Total C to T conversions in CpG context: 15892 Total C to T conversions in CHG context: 29298 Total C to T conversions in CHH context: 87564 C methylated in CpG context: 23.4% C methylated in CHG context: 2.8% C methylated in CHH context: 9.0%