EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5765 lines in total Total number of methylation call strings processed: 11530 Final Cytosine Methylation Report ================================= Total number of C's analysed: 131530 Total methylated C's in CpG context: 4057 Total methylated C's in CHG context: 764 Total methylated C's in CHH context: 6831 Total C to T conversions in CpG context: 14103 Total C to T conversions in CHG context: 26141 Total C to T conversions in CHH context: 79634 C methylated in CpG context: 22.3% C methylated in CHG context: 2.8% C methylated in CHH context: 7.9%