EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5482 lines in total Total number of methylation call strings processed: 10964 Final Cytosine Methylation Report ================================= Total number of C's analysed: 114572 Total methylated C's in CpG context: 3716 Total methylated C's in CHG context: 868 Total methylated C's in CHH context: 9505 Total C to T conversions in CpG context: 12219 Total C to T conversions in CHG context: 21906 Total C to T conversions in CHH context: 66358 C methylated in CpG context: 23.3% C methylated in CHG context: 3.8% C methylated in CHH context: 12.5%