EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5781 lines in total Total number of methylation call strings processed: 11562 Final Cytosine Methylation Report ================================= Total number of C's analysed: 129089 Total methylated C's in CpG context: 4413 Total methylated C's in CHG context: 825 Total methylated C's in CHH context: 8954 Total C to T conversions in CpG context: 13577 Total C to T conversions in CHG context: 25634 Total C to T conversions in CHH context: 75686 C methylated in CpG context: 24.5% C methylated in CHG context: 3.1% C methylated in CHH context: 10.6%