EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5670 lines in total Total number of methylation call strings processed: 11340 Final Cytosine Methylation Report ================================= Total number of C's analysed: 122182 Total methylated C's in CpG context: 3612 Total methylated C's in CHG context: 745 Total methylated C's in CHH context: 7957 Total C to T conversions in CpG context: 12685 Total C to T conversions in CHG context: 23942 Total C to T conversions in CHH context: 73241 C methylated in CpG context: 22.2% C methylated in CHG context: 3.0% C methylated in CHH context: 9.8%