EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6303 lines in total Total number of methylation call strings processed: 12606 Final Cytosine Methylation Report ================================= Total number of C's analysed: 147030 Total methylated C's in CpG context: 4930 Total methylated C's in CHG context: 870 Total methylated C's in CHH context: 7655 Total C to T conversions in CpG context: 16006 Total C to T conversions in CHG context: 29978 Total C to T conversions in CHH context: 87591 C methylated in CpG context: 23.5% C methylated in CHG context: 2.8% C methylated in CHH context: 8.0%