EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6025 lines in total Total number of methylation call strings processed: 12050 Final Cytosine Methylation Report ================================= Total number of C's analysed: 139703 Total methylated C's in CpG context: 4024 Total methylated C's in CHG context: 846 Total methylated C's in CHH context: 9549 Total C to T conversions in CpG context: 16618 Total C to T conversions in CHG context: 28366 Total C to T conversions in CHH context: 80300 C methylated in CpG context: 19.5% C methylated in CHG context: 2.9% C methylated in CHH context: 10.6%