EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6052 lines in total Total number of methylation call strings processed: 12104 Final Cytosine Methylation Report ================================= Total number of C's analysed: 136356 Total methylated C's in CpG context: 4076 Total methylated C's in CHG context: 750 Total methylated C's in CHH context: 7495 Total C to T conversions in CpG context: 14809 Total C to T conversions in CHG context: 27762 Total C to T conversions in CHH context: 81464 C methylated in CpG context: 21.6% C methylated in CHG context: 2.6% C methylated in CHH context: 8.4%