EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6079 lines in total Total number of methylation call strings processed: 12158 Final Cytosine Methylation Report ================================= Total number of C's analysed: 142480 Total methylated C's in CpG context: 4268 Total methylated C's in CHG context: 758 Total methylated C's in CHH context: 6217 Total C to T conversions in CpG context: 15025 Total C to T conversions in CHG context: 28932 Total C to T conversions in CHH context: 87280 C methylated in CpG context: 22.1% C methylated in CHG context: 2.6% C methylated in CHH context: 6.6%