EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6166 lines in total Total number of methylation call strings processed: 12332 Final Cytosine Methylation Report ================================= Total number of C's analysed: 142689 Total methylated C's in CpG context: 4367 Total methylated C's in CHG context: 800 Total methylated C's in CHH context: 7055 Total C to T conversions in CpG context: 15265 Total C to T conversions in CHG context: 28891 Total C to T conversions in CHH context: 86311 C methylated in CpG context: 22.2% C methylated in CHG context: 2.7% C methylated in CHH context: 7.6%