EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5430 lines in total Total number of methylation call strings processed: 10860 Final Cytosine Methylation Report ================================= Total number of C's analysed: 116993 Total methylated C's in CpG context: 3289 Total methylated C's in CHG context: 754 Total methylated C's in CHH context: 7877 Total C to T conversions in CpG context: 13175 Total C to T conversions in CHG context: 22791 Total C to T conversions in CHH context: 69107 C methylated in CpG context: 20.0% C methylated in CHG context: 3.2% C methylated in CHH context: 10.2%