EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5535 lines in total Total number of methylation call strings processed: 11070 Final Cytosine Methylation Report ================================= Total number of C's analysed: 121757 Total methylated C's in CpG context: 3683 Total methylated C's in CHG context: 711 Total methylated C's in CHH context: 7920 Total C to T conversions in CpG context: 13426 Total C to T conversions in CHG context: 23765 Total C to T conversions in CHH context: 72252 C methylated in CpG context: 21.5% C methylated in CHG context: 2.9% C methylated in CHH context: 9.9%