EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6020 lines in total Total number of methylation call strings processed: 12040 Final Cytosine Methylation Report ================================= Total number of C's analysed: 135404 Total methylated C's in CpG context: 4296 Total methylated C's in CHG context: 766 Total methylated C's in CHH context: 8678 Total C to T conversions in CpG context: 15179 Total C to T conversions in CHG context: 27307 Total C to T conversions in CHH context: 79178 C methylated in CpG context: 22.1% C methylated in CHG context: 2.7% C methylated in CHH context: 9.9%