EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5685 lines in total Total number of methylation call strings processed: 11370 Final Cytosine Methylation Report ================================= Total number of C's analysed: 130451 Total methylated C's in CpG context: 4328 Total methylated C's in CHG context: 732 Total methylated C's in CHH context: 6589 Total C to T conversions in CpG context: 13789 Total C to T conversions in CHG context: 25759 Total C to T conversions in CHH context: 79254 C methylated in CpG context: 23.9% C methylated in CHG context: 2.8% C methylated in CHH context: 7.7%