EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.15.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6113 lines in total Total number of methylation call strings processed: 12226 Final Cytosine Methylation Report ================================= Total number of C's analysed: 141866 Total methylated C's in CpG context: 3921 Total methylated C's in CHG context: 732 Total methylated C's in CHH context: 5272 Total C to T conversions in CpG context: 15676 Total C to T conversions in CHG context: 28147 Total C to T conversions in CHH context: 88118 C methylated in CpG context: 20.0% C methylated in CHG context: 2.5% C methylated in CHH context: 5.6%