/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-44_S41_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-44_S41_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6160
Pairs without alignments under any condition
1937
Pairs that did not map uniquely
1903
Genomic sequence context not extractable (edges of chromosomes)
24
Cytosine Methylation
Total C's analysed
178943
Methylated C's in CpG context
6808
Methylated C's in CHG context
1030
Methylated C's in CHH context
10522
Methylated C's in Unknown context
431
Unmethylated C's in CpG context
16703
Unmethylated C's in CHG context
34940
Unmethylated C's in CHH context
108940
Unmethylated C's in Unknown context
981
Percentage methylation (CpG context)
29.0%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
8.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2655
original top strand
CTOT
381
complementary to original top strand
CTOB
362
complementary to original bottom strand
OB
2738
original bottom strand
Deduplication
Alignments analysed
6136
Unique alignments
6119
Duplicates removed
17
Duplicated alignments were found at 14 different positions
