/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-43_S40_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-43_S40_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6210
Pairs without alignments under any condition
1863
Pairs that did not map uniquely
1927
Genomic sequence context not extractable (edges of chromosomes)
22
Cytosine Methylation
Total C's analysed
186153
Methylated C's in CpG context
6487
Methylated C's in CHG context
1015
Methylated C's in CHH context
11248
Methylated C's in Unknown context
369
Unmethylated C's in CpG context
18210
Unmethylated C's in CHG context
36502
Unmethylated C's in CHH context
112691
Unmethylated C's in Unknown context
1069
Percentage methylation (CpG context)
26.3%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
9.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2805
original top strand
CTOT
315
complementary to original top strand
CTOB
344
complementary to original bottom strand
OB
2724
original bottom strand
Deduplication
Alignments analysed
6188
Unique alignments
6173
Duplicates removed
15
Duplicated alignments were found at 10 different positions
