/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-42_S39_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-42_S39_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6178
Pairs without alignments under any condition
1925
Pairs that did not map uniquely
1897
Genomic sequence context not extractable (edges of chromosomes)
29
Cytosine Methylation
Total C's analysed
181548
Methylated C's in CpG context
6365
Methylated C's in CHG context
1121
Methylated C's in CHH context
11440
Methylated C's in Unknown context
442
Unmethylated C's in CpG context
17527
Unmethylated C's in CHG context
36119
Unmethylated C's in CHH context
108976
Unmethylated C's in Unknown context
1009
Percentage methylation (CpG context)
26.6%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
9.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2758
original top strand
CTOT
350
complementary to original top strand
CTOB
316
complementary to original bottom strand
OB
2725
original bottom strand
Deduplication
Alignments analysed
6149
Unique alignments
6127
Duplicates removed
22
Duplicated alignments were found at 15 different positions
