/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-41_S38_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-41_S38_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5916
Pairs without alignments under any condition
2213
Pairs that did not map uniquely
1871
Genomic sequence context not extractable (edges of chromosomes)
34
Cytosine Methylation
Total C's analysed
177246
Methylated C's in CpG context
6000
Methylated C's in CHG context
1112
Methylated C's in CHH context
12335
Methylated C's in Unknown context
466
Unmethylated C's in CpG context
17729
Unmethylated C's in CHG context
35239
Unmethylated C's in CHH context
104831
Unmethylated C's in Unknown context
1085
Percentage methylation (CpG context)
25.3%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
10.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2554
original top strand
CTOT
398
complementary to original top strand
CTOB
405
complementary to original bottom strand
OB
2525
original bottom strand
Deduplication
Alignments analysed
5882
Unique alignments
5851
Duplicates removed
31
Duplicated alignments were found at 21 different positions
