/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-230_S37_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-230_S37_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5506
Pairs without alignments under any condition
2727
Pairs that did not map uniquely
1767
Genomic sequence context not extractable (edges of chromosomes)
23
Cytosine Methylation
Total C's analysed
165045
Methylated C's in CpG context
4957
Methylated C's in CHG context
893
Methylated C's in CHH context
9444
Methylated C's in Unknown context
408
Unmethylated C's in CpG context
18617
Unmethylated C's in CHG context
32962
Unmethylated C's in CHH context
98172
Unmethylated C's in Unknown context
1023
Percentage methylation (CpG context)
21.0%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
8.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2430
original top strand
CTOT
293
complementary to original top strand
CTOB
321
complementary to original bottom strand
OB
2439
original bottom strand
Deduplication
Alignments analysed
5483
Unique alignments
5437
Duplicates removed
46
Duplicated alignments were found at 28 different positions
