/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-229_S36_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-229_S36_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6124
Pairs without alignments under any condition
1989
Pairs that did not map uniquely
1887
Genomic sequence context not extractable (edges of chromosomes)
23
Cytosine Methylation
Total C's analysed
189281
Methylated C's in CpG context
6217
Methylated C's in CHG context
1071
Methylated C's in CHH context
9366
Methylated C's in Unknown context
411
Unmethylated C's in CpG context
22113
Unmethylated C's in CHG context
38965
Unmethylated C's in CHH context
111549
Unmethylated C's in Unknown context
1220
Percentage methylation (CpG context)
21.9%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
7.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2666
original top strand
CTOT
311
complementary to original top strand
CTOB
332
complementary to original bottom strand
OB
2792
original bottom strand
Deduplication
Alignments analysed
6101
Unique alignments
6061
Duplicates removed
40
Duplicated alignments were found at 26 different positions
