/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-227_S35_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-227_S35_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6313
Pairs without alignments under any condition
1859
Pairs that did not map uniquely
1828
Genomic sequence context not extractable (edges of chromosomes)
22
Cytosine Methylation
Total C's analysed
194847
Methylated C's in CpG context
6521
Methylated C's in CHG context
1098
Methylated C's in CHH context
11910
Methylated C's in Unknown context
430
Unmethylated C's in CpG context
20032
Unmethylated C's in CHG context
38832
Unmethylated C's in CHH context
116454
Unmethylated C's in Unknown context
1106
Percentage methylation (CpG context)
24.6%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
9.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2801
original top strand
CTOT
343
complementary to original top strand
CTOB
327
complementary to original bottom strand
OB
2820
original bottom strand
Deduplication
Alignments analysed
6291
Unique alignments
6253
Duplicates removed
38
Duplicated alignments were found at 24 different positions
