/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-221_S33_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-221_S33_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6052
Pairs without alignments under any condition
1911
Pairs that did not map uniquely
2037
Genomic sequence context not extractable (edges of chromosomes)
29
Cytosine Methylation
Total C's analysed
180435
Methylated C's in CpG context
5937
Methylated C's in CHG context
1153
Methylated C's in CHH context
11247
Methylated C's in Unknown context
402
Unmethylated C's in CpG context
19015
Unmethylated C's in CHG context
35893
Unmethylated C's in CHH context
107190
Unmethylated C's in Unknown context
1162
Percentage methylation (CpG context)
23.8%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
9.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2569
original top strand
CTOT
368
complementary to original top strand
CTOB
386
complementary to original bottom strand
OB
2700
original bottom strand
Deduplication
Alignments analysed
6023
Unique alignments
5985
Duplicates removed
38
Duplicated alignments were found at 26 different positions
