/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-220_S32_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-220_S32_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6209
Pairs without alignments under any condition
1855
Pairs that did not map uniquely
1936
Genomic sequence context not extractable (edges of chromosomes)
29
Cytosine Methylation
Total C's analysed
193726
Methylated C's in CpG context
5979
Methylated C's in CHG context
1141
Methylated C's in CHH context
10272
Methylated C's in Unknown context
385
Unmethylated C's in CpG context
22164
Unmethylated C's in CHG context
39425
Unmethylated C's in CHH context
114745
Unmethylated C's in Unknown context
1092
Percentage methylation (CpG context)
21.2%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
8.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2673
original top strand
CTOT
319
complementary to original top strand
CTOB
357
complementary to original bottom strand
OB
2831
original bottom strand
Deduplication
Alignments analysed
6180
Unique alignments
6114
Duplicates removed
66
Duplicated alignments were found at 40 different positions
