/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-215_S31_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-215_S31_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6061
Pairs without alignments under any condition
2014
Pairs that did not map uniquely
1925
Genomic sequence context not extractable (edges of chromosomes)
34
Cytosine Methylation
Total C's analysed
182434
Methylated C's in CpG context
6338
Methylated C's in CHG context
1126
Methylated C's in CHH context
9585
Methylated C's in Unknown context
412
Unmethylated C's in CpG context
19112
Unmethylated C's in CHG context
37152
Unmethylated C's in CHH context
109121
Unmethylated C's in Unknown context
1087
Percentage methylation (CpG context)
24.9%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
8.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2666
original top strand
CTOT
318
complementary to original top strand
CTOB
331
complementary to original bottom strand
OB
2712
original bottom strand
Deduplication
Alignments analysed
6027
Unique alignments
5984
Duplicates removed
43
Duplicated alignments were found at 20 different positions
