/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-214_S30_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-214_S30_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5860
Pairs without alignments under any condition
2362
Pairs that did not map uniquely
1778
Genomic sequence context not extractable (edges of chromosomes)
34
Cytosine Methylation
Total C's analysed
182994
Methylated C's in CpG context
5549
Methylated C's in CHG context
1002
Methylated C's in CHH context
9397
Methylated C's in Unknown context
359
Unmethylated C's in CpG context
19690
Unmethylated C's in CHG context
36943
Unmethylated C's in CHH context
110413
Unmethylated C's in Unknown context
948
Percentage methylation (CpG context)
22.0%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
7.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2551
original top strand
CTOT
275
complementary to original top strand
CTOB
249
complementary to original bottom strand
OB
2751
original bottom strand
Deduplication
Alignments analysed
5826
Unique alignments
5765
Duplicates removed
61
Duplicated alignments were found at 37 different positions
