/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-209_S29_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-209_S29_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6152
Pairs without alignments under any condition
1905
Pairs that did not map uniquely
1943
Genomic sequence context not extractable (edges of chromosomes)
20
Cytosine Methylation
Total C's analysed
192465
Methylated C's in CpG context
6307
Methylated C's in CHG context
1051
Methylated C's in CHH context
9421
Methylated C's in Unknown context
343
Unmethylated C's in CpG context
22233
Unmethylated C's in CHG context
39408
Unmethylated C's in CHH context
114045
Unmethylated C's in Unknown context
1060
Percentage methylation (CpG context)
22.1%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
7.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2780
original top strand
CTOT
265
complementary to original top strand
CTOB
258
complementary to original bottom strand
OB
2829
original bottom strand
Deduplication
Alignments analysed
6132
Unique alignments
6085
Duplicates removed
47
Duplicated alignments were found at 32 different positions