/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-208_S28_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-208_S28_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5665
Pairs without alignments under any condition
2558
Pairs that did not map uniquely
1777
Genomic sequence context not extractable (edges of chromosomes)
31
Cytosine Methylation
Total C's analysed
165086
Methylated C's in CpG context
4498
Methylated C's in CHG context
985
Methylated C's in CHH context
10010
Methylated C's in Unknown context
507
Unmethylated C's in CpG context
17585
Unmethylated C's in CHG context
33562
Unmethylated C's in CHH context
98446
Unmethylated C's in Unknown context
1127
Percentage methylation (CpG context)
20.4%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
9.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2471
original top strand
CTOT
398
complementary to original top strand
CTOB
391
complementary to original bottom strand
OB
2374
original bottom strand
Deduplication
Alignments analysed
5634
Unique alignments
5551
Duplicates removed
83
Duplicated alignments were found at 41 different positions