/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-206_S27_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-206_S27_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6085
Pairs without alignments under any condition
1898
Pairs that did not map uniquely
2017
Genomic sequence context not extractable (edges of chromosomes)
27
Cytosine Methylation
Total C's analysed
183834
Methylated C's in CpG context
5683
Methylated C's in CHG context
1054
Methylated C's in CHH context
10504
Methylated C's in Unknown context
370
Unmethylated C's in CpG context
22049
Unmethylated C's in CHG context
37149
Unmethylated C's in CHH context
107395
Unmethylated C's in Unknown context
1039
Percentage methylation (CpG context)
20.5%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
8.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2589
original top strand
CTOT
368
complementary to original top strand
CTOB
397
complementary to original bottom strand
OB
2704
original bottom strand
Deduplication
Alignments analysed
6058
Unique alignments
6025
Duplicates removed
33
Duplicated alignments were found at 27 different positions
