/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-205_S26_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-205_S26_L004_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5560
Pairs without alignments under any condition
2442
Pairs that did not map uniquely
1998
Genomic sequence context not extractable (edges of chromosomes)
26
Cytosine Methylation
Total C's analysed
161906
Methylated C's in CpG context
5167
Methylated C's in CHG context
1131
Methylated C's in CHH context
12325
Methylated C's in Unknown context
542
Unmethylated C's in CpG context
17866
Unmethylated C's in CHG context
31647
Unmethylated C's in CHH context
93770
Unmethylated C's in Unknown context
1098
Percentage methylation (CpG context)
22.4%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
11.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2342
original top strand
CTOT
435
complementary to original top strand
CTOB
432
complementary to original bottom strand
OB
2325
original bottom strand
Deduplication
Alignments analysed
5534
Unique alignments
5482
Duplicates removed
52
Duplicated alignments were found at 36 different positions