/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-200_S25_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-200_S25_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5958
Pairs without alignments under any condition
2104
Pairs that did not map uniquely
1938
Genomic sequence context not extractable (edges of chromosomes)
20
Cytosine Methylation
Total C's analysed
174908
Methylated C's in CpG context
5732
Methylated C's in CHG context
1045
Methylated C's in CHH context
11140
Methylated C's in Unknown context
434
Unmethylated C's in CpG context
17224
Unmethylated C's in CHG context
35014
Unmethylated C's in CHH context
104753
Unmethylated C's in Unknown context
1118
Percentage methylation (CpG context)
25.0%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
9.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2648
original top strand
CTOT
358
complementary to original top strand
CTOB
352
complementary to original bottom strand
OB
2580
original bottom strand
Deduplication
Alignments analysed
5938
Unique alignments
5900
Duplicates removed
38
Duplicated alignments were found at 25 different positions
