/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-199_S24_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-199_S24_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5842
Pairs without alignments under any condition
2259
Pairs that did not map uniquely
1899
Genomic sequence context not extractable (edges of chromosomes)
36
Cytosine Methylation
Total C's analysed
177634
Methylated C's in CpG context
6014
Methylated C's in CHG context
1082
Methylated C's in CHH context
11932
Methylated C's in Unknown context
428
Unmethylated C's in CpG context
18826
Unmethylated C's in CHG context
35913
Unmethylated C's in CHH context
103867
Unmethylated C's in Unknown context
1053
Percentage methylation (CpG context)
24.2%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
10.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2481
original top strand
CTOT
394
complementary to original top strand
CTOB
375
complementary to original bottom strand
OB
2556
original bottom strand
Deduplication
Alignments analysed
5806
Unique alignments
5781
Duplicates removed
25
Duplicated alignments were found at 17 different positions
