/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-194_S23_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-194_S23_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6299
Pairs without alignments under any condition
1918
Pairs that did not map uniquely
1783
Genomic sequence context not extractable (edges of chromosomes)
28
Cytosine Methylation
Total C's analysed
202085
Methylated C's in CpG context
6978
Methylated C's in CHG context
998
Methylated C's in CHH context
10420
Methylated C's in Unknown context
309
Unmethylated C's in CpG context
21113
Unmethylated C's in CHG context
41596
Unmethylated C's in CHH context
120980
Unmethylated C's in Unknown context
1089
Percentage methylation (CpG context)
24.8%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
7.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2951
original top strand
CTOT
200
complementary to original top strand
CTOB
227
complementary to original bottom strand
OB
2893
original bottom strand
Deduplication
Alignments analysed
6271
Unique alignments
6237
Duplicates removed
34
Duplicated alignments were found at 29 different positions
