/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-193_S22_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-193_S22_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5757
Pairs without alignments under any condition
2468
Pairs that did not map uniquely
1775
Genomic sequence context not extractable (edges of chromosomes)
36
Cytosine Methylation
Total C's analysed
171199
Methylated C's in CpG context
5037
Methylated C's in CHG context
983
Methylated C's in CHH context
10334
Methylated C's in Unknown context
393
Unmethylated C's in CpG context
17970
Unmethylated C's in CHG context
34380
Unmethylated C's in CHH context
102495
Unmethylated C's in Unknown context
1068
Percentage methylation (CpG context)
21.9%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
9.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2514
original top strand
CTOT
307
complementary to original top strand
CTOB
375
complementary to original bottom strand
OB
2525
original bottom strand
Deduplication
Alignments analysed
5721
Unique alignments
5670
Duplicates removed
51
Duplicated alignments were found at 31 different positions
