/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-188_S21_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-188_S21_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5670
Pairs without alignments under any condition
2521
Pairs that did not map uniquely
1809
Genomic sequence context not extractable (edges of chromosomes)
22
Cytosine Methylation
Total C's analysed
167150
Methylated C's in CpG context
4841
Methylated C's in CHG context
992
Methylated C's in CHH context
9590
Methylated C's in Unknown context
461
Unmethylated C's in CpG context
19033
Unmethylated C's in CHG context
33458
Unmethylated C's in CHH context
99236
Unmethylated C's in Unknown context
1032
Percentage methylation (CpG context)
20.3%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
8.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2443
original top strand
CTOT
345
complementary to original top strand
CTOB
364
complementary to original bottom strand
OB
2496
original bottom strand
Deduplication
Alignments analysed
5648
Unique alignments
5595
Duplicates removed
53
Duplicated alignments were found at 29 different positions
