/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-187_S20_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-187_S20_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6396
Pairs without alignments under any condition
1731
Pairs that did not map uniquely
1873
Genomic sequence context not extractable (edges of chromosomes)
29
Cytosine Methylation
Total C's analysed
201849
Methylated C's in CpG context
6691
Methylated C's in CHG context
1111
Methylated C's in CHH context
10221
Methylated C's in Unknown context
352
Unmethylated C's in CpG context
22198
Unmethylated C's in CHG context
41679
Unmethylated C's in CHH context
119949
Unmethylated C's in Unknown context
1068
Percentage methylation (CpG context)
23.2%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
7.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2880
original top strand
CTOT
252
complementary to original top strand
CTOB
248
complementary to original bottom strand
OB
2987
original bottom strand
Deduplication
Alignments analysed
6367
Unique alignments
6303
Duplicates removed
64
Duplicated alignments were found at 40 different positions
