/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-185_S19_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-185_S19_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6151
Pairs without alignments under any condition
1970
Pairs that did not map uniquely
1879
Genomic sequence context not extractable (edges of chromosomes)
53
Cytosine Methylation
Total C's analysed
196656
Methylated C's in CpG context
5488
Methylated C's in CHG context
1109
Methylated C's in CHH context
12789
Methylated C's in Unknown context
489
Unmethylated C's in CpG context
23845
Unmethylated C's in CHG context
40687
Unmethylated C's in CHH context
112738
Unmethylated C's in Unknown context
1148
Percentage methylation (CpG context)
18.7%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
10.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2567
original top strand
CTOT
385
complementary to original top strand
CTOB
382
complementary to original bottom strand
OB
2764
original bottom strand
Deduplication
Alignments analysed
6098
Unique alignments
6025
Duplicates removed
73
Duplicated alignments were found at 34 different positions
