/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-184_S18_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-184_S18_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6168
Pairs without alignments under any condition
1991
Pairs that did not map uniquely
1841
Genomic sequence context not extractable (edges of chromosomes)
44
Cytosine Methylation
Total C's analysed
191882
Methylated C's in CpG context
5559
Methylated C's in CHG context
996
Methylated C's in CHH context
9857
Methylated C's in Unknown context
358
Unmethylated C's in CpG context
21022
Unmethylated C's in CHG context
39860
Unmethylated C's in CHH context
114588
Unmethylated C's in Unknown context
1191
Percentage methylation (CpG context)
20.9%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
7.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2782
original top strand
CTOT
288
complementary to original top strand
CTOB
321
complementary to original bottom strand
OB
2733
original bottom strand
Deduplication
Alignments analysed
6124
Unique alignments
6052
Duplicates removed
72
Duplicated alignments were found at 36 different positions
