/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-181_S16_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-181_S16_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6090
Pairs without alignments under any condition
2168
Pairs that did not map uniquely
1742
Genomic sequence context not extractable (edges of chromosomes)
38
Cytosine Methylation
Total C's analysed
199063
Methylated C's in CpG context
6179
Methylated C's in CHG context
1019
Methylated C's in CHH context
9447
Methylated C's in Unknown context
329
Unmethylated C's in CpG context
22976
Unmethylated C's in CHG context
41115
Unmethylated C's in CHH context
118327
Unmethylated C's in Unknown context
1095
Percentage methylation (CpG context)
21.2%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
7.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2741
original top strand
CTOT
194
complementary to original top strand
CTOB
214
complementary to original bottom strand
OB
2903
original bottom strand
Deduplication
Alignments analysed
6052
Unique alignments
5974
Duplicates removed
78
Duplicated alignments were found at 46 different positions
